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Table 4 Best-matched orthologs and their species of origin identified using SmartBLAST protein sequence analysis

From: Bioinformatic analysis and functional predictions of selected regeneration-associated transcripts expressed by zebrafish microglia

Gene IDa

Accession ID

Orthologs

Evalueb

Query coverc

Identityd

Species

P1

NP_003812.1

Receptor-interacting serine/threonine-protein kinase 2 isoform 1

2.00e-39

94%

27.54%

Homo sapiens

NP_620402.1

Receptor-interacting serine/threonine-protein kinase 2 isoform 1

6.00e-37

89%

28.74%

Mus musculus

P2

XP_005164418.2

Uncharacterized protein LOC101885950

0.00

95%

54.14%

Danio rerio

XP_017210637.2

Uncharacterized protein LOC108179149

2.00e-164

79%

37.53%

Danio rerio

XP_021326567.1

Uncharacterized protein LOC101885087

5.00e-151

74%

37.47%

Danio rerio

P3

XP_005166230.1

Uncharacterized protein LOC100136852 isoform X2

0.00

100%

54%

Danio rerio

XP_016100849.1

PREDICTED: uncharacterized protein LOC107561032 isoform X3

1.00e-113

98%

58.82%

Danio rerio

NP_001076332.2

Junctional adhesion molecule 3b

2.00e-02

33%

29.41%

Danio rerio

P4

XP_026123653.1

Uncharacterized protein LOC113106193 isoform X1

4.00e-177

100%

62.04%

Carassius auratus

XP_016389660.1

PREDICTED: cell surface glycoprotein 1-like isoform X4

1.00e-173

100%

64.76%

Sinocyclocheilus rhinocerous

XP_016333309.1

PREDICTED: serine-aspartate repeat-containing protein I-like isoform X1

2.00e-165

100%

63.72%

Sinocyclocheilus anshuiensis

XP_016105136.1

PREDICTED: calphotin-like

3.00e-164

100%

62.79%

Sinocyclocheilus grahami

P5

ROL44899.1

Hypothetical protein DPX16_9111

6.00e-121

100%

63.40%

Anabarilius grahami

XP_016143106.1

PREDICTED: uncharacterized protein LOC107596800

9,00e-115

100%

63.19%

Sinocyclocheilus grahami

XP_016395950.1

PREDICTED: uncharacterized protein LOC107729778 isoform X2

5.00e-113

100%

62.50%

Sinocyclocheilus rhinocerous

XP_018973499.1

PREDICTED: uncharacterized protein LOC109104670 isoform X2

3.00e-110

100%

61.69%

Cyprinus carpio

P6

XP_016397186.1

PREDICTED: cell wall protein RTB1-like

1.00e-122

91%

54.81%

Sinocyclocheilus rhinocerous

XP_016343246.1

PREDICTED: mucin-5 AC-like

2.00E-122

91%

55.03%

Sinocyclocheilus anshuiensis

XP_016091956.1

PREDICTED: mucin-5 AC-like

3,00E-106

91%

51.01%

Sinocyclocheilus grahami

XP_016124548.1

PREDICTED: cell wall protein DAN4-like

6,00E-105

92%

52.30%

Sinocyclocheilus grahami

P7

RXN26987.1

Hypothetical protein ROHU_020440

9,00E-65

100%

87.88%

Labeo rohita

KTG33652.1

Hypothetical protein cypCar_00001489

2,00E-64

100%

87.88%

Cyprinus carpio

XP_026090693.1

Uncharacterized protein LOC113064245

2,00E-63

100%

86.87%

Carassius auratus

ROL47558.1

Hypothetical protein DPX16_13273

6,00E-63

100%

86.87%

Anabarilius grahami

KAA0720020.1

Hypothetical protein E1301

5,00E-58

100%

78.43%

Triplophysa tibetana

P8

XP_009294219.1

uncharacterized protein si:ch211-239 m17.1 isoform X4

2,00E-141

93%

98.48%

Danio rerio

P9

KTG45257.1

Hypothetical protein cypCar_00011656

7,00E-90

95%

85.03%

Cyprinus carpio

ROL51783.1

Hypothetical protein DPX16_19302

2.00e-88

82%

94.49%

Anabarilius grahami

TRY88805.1

Hypothetical protein DNTS_015019

4,00E-87

100%

77.27%

Danionella translucida

P10

NP_001108533.1

Chemokine (C-X-C motif) ligand 32b, duplicate 1 precursor

5,00E-10

71%

35.16%

Danio rerio

NP_003166.1

Cytokine SCM-1 beta precursor

5,00E-08

68%

27.91%

Homo sapiens

NP_032536.1

Lymphotactin precursor

1,00E-05

75%

27.27%

Mus musculus

NP_002986.1

Lymphotactin precursor

3,00E-07

68%

27.91%

Homo sapiens

NP_067418.1

C-C motif chemokine 8 precursor

2,00E-05

67%

32.61%

Mus musculus

P11

XP_016428050.1

Maltase-glucoamylase, intestinal isoform 2

0.00

98%

57.17%

Homo sapiens

NP_001074606.1

Sucrase-isomaltase, intestinal

0.00

99%

55.67%

Mus musculus

P12

AAI28789.1

Zgc:165381 protein

0.00

26%

100%

Danio rerio

  1. aGene ID: P1 to P12 correspond to the symbol used for each predicted protein subjected to bioinformatics analysis
  2. bE value: The Expect value (E-value) is the number of hits one can “expect” to see by chance when searching a database of a particular size (https://blast.ncbi.nlm.nih.gov). The lower the E-value, or the closer it is to zero, the more “significant” the match is
  3. cQuery cover is the percentage of the query’s sequence (zebrafish gene of interest) that overlaps the subject’s sequence (returned orthologs)
  4. dIdentity is calculated as the percentage of characters (amino acid) within the covered part of the query that are identical
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BMC Genomics

ISSN: 1471-2164

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