Bioinformatic analysis and functional predictions of selected regeneration-associated transcripts expressed by zebrafish microglia

Table 7 Expression of zebrafish genes pertaining to P1-P12 in macrophages responding to microbial infection

Gene ID^a	Zebrafish Symbol^b	Ensembl ID	DE^c in Macrophages responding to M. marinum infection?
P1	si:dkey-181f22.4	ENSDARG00000105643	ND
P2	si:ch73-112 l6.1	ENSDARG00000093126	No
P3	zgc:174863	ENSDARG00000099476	ND
P4	si:dkey-56 m19.5	ENSDARG00000068432	No
P5	si:ch211-105j21.9	ENSDARG00000097845	No
P6	si:ch73-248e21.7	ENSDARG00000096331	Yes
P7	si:ch211-191j22.3	ENSDARG00000095459	No
P8	LOC100535303	ENSDARG00000071653	No
P9	urp1	ENSDARG00000093493	No
P10	xcl32a.1	ENSDARG00000093906	No
P11	si:ch211-287n14.3	ENSDARG00000093650	No
P12	pho	ENSDARG00000035133	No

The twelve genes of interest were examined in the RNA-seq dataset from Rouget et al., 2019 (GSE78954 and GSE68920), which examined the transcriptome of zebrafish macrophages responding to M. marinum infection
^aGene ID: Corresponds to the zebrafish gene of interest in this study
^bZebrafish Symbol: corresponds to the symbol attributed to each gene by the ZFIN Zebrafish Nomenclature Conventions
^cDE: Differential Expression in zebrafish macrophages responding to infection compared to uninfected. Using the RNA-seq datasets from Rouget et al., 2019, DE was based on the authors’ original criteria of logFC greater than or equal to 1, and p-adj < 0.05. “Yes” or “No” indicates that the gene was differentially expressed or not, respectively. ND indicates that the transcript not detected in the dataset

ISSN: 1471-2164