Table 1 Avian species analyzed in this study in terms of duplicated regions as well as gene orders found within their mitogenomic fragments, which were amplified and sequenced. The sequences are presented in Fig. S3 and S10
Order | Species | Sample type | Source1 | Accession number | Length (bp) | Fragment2 |
|---|---|---|---|---|---|---|
Casuariiformes | Casuarius casuarius | Blood | ZOO WAW | ̶− | ̶− | ̶− |
Casuariiformes | Dromaius novaehollandiae | Blood | ZOO WAW | ̶− | ̶− | ̶− |
Rheiformes | Rhea americana | Blood | ZOO KAT | MK696563 | 8254 | ND5/cytb/T/P1/ND6–1/E1/CR1/P2/ND6–2/E2/CR2/F/12S/V/16S |
Rheiformes | Rhea pennata | Blood | ZOO WAW | MK696564 | 8306 | ND5/cytb/T/P1/ND6–1/E1/CR1/P2/ND6–2/E2/CR2/F/12S/V/16S |
Struthioniformes | Struthio camelus | Blood | ZOO WRO | MH264503 | 8554 | L/ND5/cytb/T/P1/ND6–1/E1/CR1/P2/ND6–2/E2/CR2/F/12S/V/16S |
Tinamiformes | Crypturellus tataupa | Blood | ZOO WAW | MK696562 | 7044 | ND5/cytb/T/P1/ND6–1/E1/CR1/P2/ND6–2/E2/CR2/F/12S |
Galliformes | Chrysolophus pictus | Blood | DPB UPWR | MW151829 | 1881 | CR1/F/ Ψ12S/ΨND6/E/CR2 |
Caprimulgiformes | Apus apus | Blood | ORZ K | MW151827 | 2003 | CR1/Ψcytb/T/P/ND6/E/CR2 |
Cathartiformes | Cathartes aura | Blood | ZOO GDA | MN629891 | 7969 | ND5/cytb/T1/P1/ND6–1/E1/CR1/Ψcytb/T2/P2/ND6–2/E2/CR2/F/12S |
Charadriiformes | Alca torda | Muscle | DVEZ UG | MK263222 | 2251 | CR1/Ψcytb/T/P/ND6/E/CR2 |
Charadriiformes | Uria aalge | Muscle | DVEZ UG | MK263188 | 2261 | CR1/Ψcytb/T/P/ND6/E/CR2 |
Ciconiiformes | Ciconia nigra | Blood | ZOO WAW | MH264509 | 3058 | CR1/Ψcytb/T/P/ND6/E/CR2 |
Eurypygiformes | Eurypyga helias | Blood | ZOO WAW | MW208859 | 7473 | cytb/T/P/ND6/E/CR1/ … 3’rCR2/F/12S |
Eurypygiformes | Rhynochetos jubatus | Feathers | BAP | ̶− | ̶− | ̶− |
Gaviiformes | Gavia arctica | Muscle | DVEZ UG | MK263210 | 6598 | cytb/T1/P1/ND6–1/E1/CR1/Ψcytb/T2/P2/ND6–2/E2/CR2/F/12S |
Gaviiformes | Gavia stellata | Muscle | DVEZ UG | MK263209 | 7539 | cytb/T1/P1/ND6–1/E1/CR1/Ψcytb/T2/P2/ND6–2/E2/CR2/F/12S |
Musophagiformes | Corythaixoides personatus | Blood | Poland, captive | MW082596 | 2002 | CR1/Ψcytb/T/P/ND6/E/CR2 |
Pelecaniformes | Scopus umbretta | Blood | ZOO WRO | MW151828 | 1632 | CR1/P/ND6/E/CR2 |
Podicipediformes | Podiceps cristatus | Muscle | DVEZ UG | MN629890 | 5171 | cytb/T1/P1/ND6–1/E1/CR1/Ψcytb/T2/P2/ND6–2/E2/CR2 |
Podicipediformes | Podiceps grisegena | Muscle | DVEZ UG | MK263194 | 4061 | ND6–1/E1/CR1/Ψcytb/T2/P2/ND6–2/E2/CR2 |
Sphenisciformes | Spheniscus demersus | Blood | ZOO WRO | MH264510 | 3032 | CR1/Ψcytb/T/P/ND6/E/CR2 |
Trogoniformes | Trogon collaris | Feathers | WBF | ̶− | ̶− | from cytb to 12S - not sequenced; from CR1 to CR2 - not sequenced |