Fig. 4

Regional association plots of the significant SNP (MARC0013872) associated with ADG and LMP at SSC1. In the plots, the red and blue represent the 5% genome-wide and chromosome-wide (suggestive) Bonferroni-corrected thresholds, respectively. The significant SNP are indicated by big blue triangles. SNPs are denoted by colored diamonds depending on the target SNP with which they were in strongest LD. The plots indicate the association results for ADG on American origin Duroc pigs (a) before and (b) after conditional analysis on MARC0013872. The plots indicate the association results for LMP on American origin Duroc pigs (c) before and (d) after conditional analysis on MARC0013872. The plots indicate the association results for LMP on Canadian origin Duroc pigs (e) before and (f) after conditional analysis on MARC0013872