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Table 4 Prediction performance in soybean for five traits of eight methods in terms of Pearson’s correlation (taken from Liu et al., 2019); A). Methods dualCNN, deepGS and singleCNN are different versions of CNN. Prediction performance in terms of Average Spearman Correlation (ASC) and mean square error (MSE) with genotype × environment interaction (I) and without genotype × environment interaction (WI) in a wheat dataset for trait Fusarium head blight (FHB) severity data (Montesinos-López et al., 2020; B)

From: A review of deep learning applications for genomic selection

A

Method

Yield

Protein

Oil

Moisture

Height

 

dualCNN

0.452

0.619

0.668

0.463

0.615

 

DeepGS

0.391

0.506

0.531

0.31

0.452

 

Dense

0.449

0.603

0.657

0.427

0.612

 

singleCNN

0.463

0.573

0.627

0.449

0.565

 

rrBLUP

0.412

0.392

0.39

0.413

0.458

 

BRR

0.422

0.392

0.39

0.413

0.458

 

Bayes A

0.419

0.393

0.388

0.415

0.458

 

BL

0.419

0.394

0.388

0.416

0.458

B

Interaction

Type

ASC

SE

MSE

SE

 

I

BRR

0.584

0.012

3.015

0.169

 

I

NDNN

0.626

0.013

1.891

0.088

 

I

GP

0.596

0.01

2.457

0.121

 

I

PDNN

0.627

0.012

1.912

0.073

 

WI

BRR

0.436

0.018

4.481

0.25

 

WI

NDNN

0.635

0.013

1.872

0.084

 

WI

GP

0.431

0.018

3.418

0.186

 

WI

PDNN

0.584

0.014

2.853

0.412