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Fig. 4 | BMC Genomics

Fig. 4

From: Reliability of genomic variants across different next-generation sequencing platforms and bioinformatic processing pipelines

Fig. 4

Concordance of variant calls between experimental setups in RepeatMasker regions. Heatmaps show the pairwise concordance for SNPs (a, c, e, g, i) and indels (b, d f, h, j) in distinct RepeatMasker regions. Values correspond to the Jaccard distance, which ranges between 0 and 1. Higher values indicate decreased concordance between the respective experimental setups. CG: Complete Genomics; MOL: Illumina HiSeq; HSX: Illumina HiSeq X; LINE: long interspersed nuclear elements; LTR: long terminal repeats

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BMC Genomics

ISSN: 1471-2164

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