Setup | SNPs | indels | ||||
---|---|---|---|---|---|---|
Observed | Expected | Ratio (95% CI) | Observed | Expected | Ratio (95% CI) | |
CG unique | 83,820 | 449 | 186.51 (170.71 to 205.96) | 47,640 | 6602 | 7.22 (7.05 to 7.38) |
MOL + Isaac unique | 46,188 | 556 | 83.05 (76.22 to 90.75) | 31,978 | 5994 | 5.33 (5.21 to 5.47) |
HSX + Isaac unique | 84,587 | 881 | 96.05 (90.08 to 102.78) | 55,376 | 17,455 | 3.17 (3.13 to 3.22) |
MOL + GATK unique | 25,309 | 530 | 47.75 (43.94 to 52.18) | 37,960 | 24,442 | 1.55 (1.54 to 1.57) |
HSX + GATK unique | 40,320 | 633 | 63.67 (59.03 to 68.93) | 148,008 | 51,200 | 2.89 (2.87 to 2.91) |
Intersection all | 2,942,659 | 2,087,460 | 1.41 (1.409 to 1.41) | 214,730 | 42,853 | 5.01 (4.97 to 5.05) |