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Table 1 CDPK genes in B. distachyon

From: Genome-wide survey and expression analysis of calcium-dependent protein kinase (CDPK) in grass Brachypodium distachyon

Gene Name

Gene Locus

Genebank Acc. No.

ORF (bp)

Exon No.

Pepide length

PKD

EF-hand domain

PI

MW (KD)

N- myrista

N- Palmitb

Subcellular Localizationc

BdCDPK01

Bradi1g04440

XM_010229652

1602

8

533

58–316

366–533

6.31

59.96

N

Y

pero: 6, mito: 5, chlo: 2

BdCDPK02

Bradi1g06270

XM_010230428

1773

7

590

127–385

435–590

5.29

64.59

N

Y

vacu: 6, chlo: 4, nucl: 2, pero: 1

BdCDPK03

Bradi1g06300

XM_024456669

1872

7

623

157–415

465–623

5.84

68.48

N

Y

chlo: 6, vacu: 6, nucl: 1

BdCDPK04

Bradi1g12150

XM_003559516

1863

6

620

109–405

455–620

9.35

68.74

N

Y

chlo: 6, vacu: 3, E.R.: 2, nucl: 1.5, cysk_nucl: 1.5

BdCDPK05

Bradi1g24240

XM_003562825

1617

8

538

64–322

372–538

6.98

60.5

N

Y

cyto: 7, pero: 3, E.R.: 2, plas: 1

BdCDPK06

Bradi1g26310

XM_024456613

1599

8

532

84–342

391–532

5.8

59.38

N

Y

chlo: 8, cyto: 3, nucl: 2

BdCDPK07

Bradi1g52567

XM_003557252

1551

12

516

53–313

363–516

7.63

57.85

N

Y

cysk: 7, cyto: 3, chlo: 1, nucl: 1, plas: 1

BdCDPK08

Bradi1g56970

XM_010230066

1704

7

567

105–363

413–567

5.17

62.42

N

Y

E.R.: 5, chlo: 2, nucl: 2, cyto: 1, plas: 1, vacu: 1, pero: 1

BdCDPK09

Bradi1g76560

XM_024456675

1653

7

550

80–339

389–550

5.45

61.51

N

Y

nucl: 3.5, cyto_nucl: 3.5, mito: 3, plas: 3, cyto: 2.5, chlo: 2

BdCDPK10

Bradi2g15520

XM_003567783

1647

8

548

96–354

404–548

6.56

62.12

Y

N

chlo: 5, nucl: 5, pero: 3

BdCDPK11

Bradi2g21390

XM_003568155

1551

7

516

62–320

370–516

5.59

56.94

N

Y

chlo: 3, plas: 3, vacu: 2, E.R.: 2, nucl: 1.5, cysk_nucl: 1.5

BdCDPK12

Bradi2g21790

XM_003566058

1575

7

524

13–298

364–524

5.33

58

N

N

chlo: 6, cyto: 4, nucl: 3.5, nucl_plas: 2.5

BdCDPK13

Bradi2g22750

XM_003568218

1647

7

548

74–332

382–548

6.25

60.79

N

Y

cyto: 4, mito: 3, chlo: 2, E.R.: 2, pero: 1, cysk: 1

BdCDPK14

Bradi2g43910

XM_003569338

1581

8

526

74–332

382–526

5.8

59.44

Y

N

mito: 8, chlo: 4, nucl: 1

BdCDPK15

Bradi2g52870

XM_003564390

1545

6

514

59–317

367–514

5.45

56.78

N

Y

chlo: 4, plas: 3, nucl: 2.5, cyto: 2, cysk_nucl: 2, vacu: 1

BdCDPK16

Bradi2g54080

XM_024458897

1686

6

561

62–320

370–561

6.49

63.26

N

Y

chlo: 4, cyto: 4, mito: 2, E.R.: 1, pero: 1, cysk: 1

BdCDPK17

Bradi3g02600

XM_010235446

1563

12

520

57–317

367–520

8.99

58.64

Y

Y

cyto: 7, chlo: 2, nucl: 2, mito: 2

BdCDPK18

Bradi3g32187

XM_003571966

1527

6

508

66–324

374–508

5.23

57.16

N

Y

mito: 4, nucl: 3, chlo: 2, cyto: 2, plas: 1, pero: 1

BdCDPK19

Bradi3g41770

XM_003572421

1740

3

579

78–368

418–579

6.5

63.84

Y

Y

chlo: 5, cyto: 2, mito: 2, nucl: 1, vacu: 1, E.R.: 1, cysk: 1

BdCDPK20

Bradi3g51970

XM_003570070

1671

7

556

98–356

406–556

5.45

56.78

Y

Y

mito: 10.5, chlo_mito: 7.5, chlo: 3.5

BdCDPK21

Bradi3g60750

XM_003570682

1599

2

532

57–325

375–532

5.13

58.5

Y

Y

cyto: 7, mito: 4, nucl: 2

BdCDPK22

Bradi4g07280

XM_010240643

1833

6

610

158–416

466–610

5.92

67.78

Y

Y

chlo: 5, mito: 3.5, cyto_mito: 2.5, cyto: 2, nucl: 1, E.R.: 1

BdCDPK23

Bradi4g24390

XM_003577735

1557

7

518

52–310

360–518

5.28

57.05

N

N

chlo: 11, E.R.: 2

BdCDPK24

Bradi4g26317

XM_003576298

1599

5

532

75–333

383–532

5.6

58.44

Y

Y

cyto: 7, chlo: 4, nucl: 2

BdCDPK25

Bradi4g35100

XM_003578386

1698

8

565

88–358

426–565

5.95

62.54

Y

Y

chlo: 3, mito: 3, cyto: 2, plas: 2, vacu: 2, nucl: 1

BdCDPK26

Bradi4g39870

XM_003578709

1713

6

570

81–339

389–570

6.14

63.3

N

Y

chlo: 6, mito: 6, cyto: 1

BdCDPK27

Bradi4g40300

XM_003578741

1572

7

523

48–306

356–523

5.53

57.65

N

N

chlo: 7, E.R.: 3, plas: 2, nucl: 1

BdCDPK28

Bradi4g43400

XM_003578916

1650

6

549

91–349

399–549

4.94

60.07

N

Y

cyto: 10, nucl: 3

BdCDPK29

Bradi5g18250

XM_010241951

1719

7

572

99–388

437–572

6.6

64.05

Y

Y

cyto: 7, chlo: 4, nucl: 2

BdCDPK30

Bradi5g19430

XM_003580349

1686

7

561

98–356

406–561

5.49

61.59

Y

Y

mito: 9.5, chlo_mito: 7, chlo: 3.5

  1. ORF Open Reading Frame, PKD Protein kinase domain, PI isoelectric point
  2. a. The myristoylation site was predicted by Myristoylator program in ExPASy (http://web.expasy.org/myristoylator/)
  3. b. The palmitoylation site was predicted by CSS-plam4.0 (http://csspalm.biocuckoo.org/)
  4. c. chlo Chloroplast, cysk Cytoskeleton, cyto Cytoplasmic, E.R. Endoplasmic reticulum, mito Mitochondrial, nucl Nuclear, pero Peroxysome, plas Plasma membrane, vacu Vacuole