Sample | Number of raw reads | Q30 (%) | Number of clean reads | Q30 (%) | Mapped clean reads | Mapped ratio(%) |
---|---|---|---|---|---|---|
C1 | 75,721,168 | 88.544 | 74,808,692 | 89.44 | 52,233,344 | 69.8226 |
C5 | 43,511,812 | 90.96 | 43,136,688 | 91.69 | 30,654,690 | 71.0641 |
C6 | 44,022,606 | 91.22 | 43,713,040 | 91.85 | 32,352,233 | 74.0105 |
S4 | 55,033,428 | 86.48 | 54,047,972 | 87.70 | 37,247,738 | 68.9161 |
S5 | 64,567,494 | 86.92 | 63,504,896 | 88.06 | 43,706,215 | 68.8234 |
S6 | 64,847,564 | 89.3 | 64,143,714 | 90.12 | 44,873,133 | 69.9572 |
A4 | 54,989,278 | 85.66 | 53,892,592 | 86.98 | 36,759,709 | 68.2092 |
A5 | 45,237,800 | 86.22 | 44,285,538 | 87.58 | 30,725,853 | 69.3812 |
A6 | 44,832,372 | 90.99 | 44,459,288 | 91.71 | 32,794,998 | 73.7641 |
SA4 | 44,979,952 | 90.99 | 44,613,938 | 91.7 | 33,268,715 | 74.5702 |
SA5 | 46,376,590 | 91.01 | 46,009,836 | 91.71 | 33,172,654 | 72.099 |
SA6 | 43,246,430 | 91.09 | 42,893,882 | 91.78 | 32,244,543 | 75.1728 |