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Table 2 Third generation sequencing statistical summary of sequenced and assembled results

From: Transcriptome sequencing and whole genome expression profiling of hexaploid sweetpotato under salt stress

 

Unigenes

Transcripts

Total number of sequences

15,998

16,856

Total sequences length

34,848,832

36,928,928

Maximum length

9,135

9,135

Minimum length

208

208

Average length

2,178

2,190

Percent GC

43.10%

43.12%

N40

3,698

3,733

N50

2,652

2,701

N60

2,131

2,155

N70

1,785

1,795

N80

1,503

1,509

N90

1,162

1,168

  1. N50, represents sorting the assembled transcripts from long to short by length, accumulating the length of the transcript to 50% of the total length, corresponding to the length of the transcript, and so on
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BMC Genomics

ISSN: 1471-2164

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