Table 1 Numbers of SNP and DArT markers identified in T. turgidum and T. aestivum accessions. The total numbers of markers before and after filtering, and their distribution within the genomes and chromosomes are presented. NA, no data available, as D genome is not present in T. turgidum
From: Genomic analysis of Spanish wheat landraces reveals their variability and potential for breeding
| Â | Triticum turgidum | Triticum aestivum | ||||||
|---|---|---|---|---|---|---|---|---|
Raw DARTs | Filtered DARTs | Raw SNPs | Filtered SNPs | Raw DARTs | Filtered DARTs | Raw SNPs | Filtered SNPs | |
Total | 98,983 | 38,700 | 51,751 | 9324 | 130,899 | 44,241 | 58,660 | 8238 |
Located | 41,429 | 17,442 | 32,811 | 6192 | 46,665 | 16,090 | 34,497 | 4738 |
Not located | 57,554 | 21,258 | 18,940 | 3132 | 84,234 | 28,151 | 24,163 | 3500 |
Genome A | 19,307 | 7907 | 15,719 | 2957 | 16,127 | 5957 | 12,762 | 1958 |
Genome B | 22,122 | 9535 | 17,092 | 3235 | 17,754 | 7000 | 13,636 | 1963 |
Genome D | NA | NA | NA | NA | 12,784 | 3133 | 8099 | 817 |
1A | 2047 | 863 | 1758 | 378 | 1841 | 723 | 1594 | 285 |
1B | 2972 | 1311 | 2341 | 505 | 2431 | 952 | 1888 | 278 |
1D | NA | NA | NA | NA | 1797 | 384 | 1046 | 101 |
2A | 3079 | 1173 | 2581 | 519 | 2549 | 891 | 2072 | 302 |
2B | 4017 | 1661 | 3117 | 553 | 3188 | 1272 | 2500 | 345 |
2D | NA | NA | NA | NA | 2501 | 773 | 1627 | 156 |
3A | 2757 | 1057 | 2252 | 409 | 2258 | 687 | 1923 | 316 |
3B | 3604 | 1570 | 2795 | 527 | 2763 | 1076 | 2256 | 331 |
3D | NA | NA | NA | NA | 1877 | 406 | 1279 | 106 |
4A | 2587 | 1050 | 1805 | 295 | 2233 | 877 | 1453 | 167 |
4B | 1763 | 743 | 1328 | 295 | 1492 | 491 | 1028 | 145 |
4D | NA | NA | NA | NA | 1033 | 170 | 515 | 71 |
5A | 2603 | 998 | 2224 | 486 | 2135 | 701 | 1749 | 330 |
5B | 3054 | 1197 | 2332 | 462 | 2572 | 1007 | 1948 | 299 |
5D | NA | NA | NA | NA | 1731 | 383 | 1068 | 119 |
6A | 2364 | 1027 | 1819 | 306 | 1909 | 777 | 1385 | 203 |
6B | 3360 | 1541 | 2567 | 411 | 2467 | 1027 | 1970 | 283 |
6D | NA | NA | NA | NA | 1536 | 432 | 1013 | 118 |
7A | 3870 | 1739 | 3280 | 564 | 3202 | 1301 | 2586 | 355 |
7B | 3352 | 1512 | 2612 | 482 | 2841 | 1175 | 2046 | 282 |
7D | NA | NA | NA | NA | 2309 | 585 | 1551 | 146 |