Table 2 Candidate genes for tannins and starch content that mapped into various KEGG pathways
Trait | SNP | Chr | Position (bp)a | P-value | candidate gene | Distance (kb)b | Annotation | Pathwayc |
|---|---|---|---|---|---|---|---|---|
Tannins | 4:3635914 | 4 | 3,635,914 | 2.45E-06 | Sobic.004G044200 | 1.01 | 1,4-dihydroxy-2-naphthoyl-CoA synthase, peroxisomal | Ubiquinone and other terpenoid-quinone biosynthesis |
4:61736881 | 4 | 61,736,881 | 1.62E-08 | Sobic.004G273900 | 33.72 | peroxidase 5 | Phenylpropanoid biosynthesis | |
5:34971014 | 5 | 34,971,014 | 6.02E-12 | Sobic.005G110600 | 32.00 | chitinase-3-like protein 1 | Amino sugar and nucleotide sugar metabolism | |
8:57291105 | 8 | 57,291,105 | 2.55E-08 | Sobic.008G141700 | 2.38 | heparanase-like protein 1 | Glycosaminoglycan degradation | |
9:8660880 | 9 | 8,660,880 | 1.22E-08 | Sobic.009G072000 | −26.21 | phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial | Purine metabolism | |
9:8660880 | 9 | 8,660,880 | 1.22E-08 | Sobic.009G071800 | −36.11 | ATP-dependent 6-phosphofructokinase 6 | Pentose phosphate pathway | |
9:8660880 | 9 | 8,660,880 | 1.22E-08 | Sobic.009G071800 | −36.11 | ATP-dependent 6-phosphofructokinase 6 | Glycolysis/gluconeogenesis | |
9:8660880 | 9 | 8,660,880 | 1.22E-08 | Sobic.009G071800 | −36.11 | ATP-dependent 6-phosphofructokinase 6 | RNA degradation | |
9:8660880 | 9 | 8,660,880 | 1.22E-08 | Sobic.009G071800 | −36.11 | ATP-dependent 6-phosphofructokinase 6 | Biosynthesis of amino acids | |
9:8660880 | 9 | 8,660,880 | 1.22E-08 | Sobic.009G071800 | −36.11 | ATP-dependent 6-phosphofructokinase 6 | Fructose and mannose metabolism | |
9:8660880 | 9 | 8,660,880 | 1.22E-08 | Sobic.009G071800 | −36.11 | ATP-dependent 6-phosphofructokinase 6 | Carbon metabolism | |
9:8660880 | 9 | 8,660,880 | 1.22E-08 | Sobic.009G071800 | −36.11 | ATP-dependent 6-phosphofructokinase 6 | Galactose metabolism | |
Starch | 4:56136753 | 4 | 56,136,753 | 3.66E-07 | Sobic.004G211866 | 15.24 | S-adenosylmethionine decarboxylase proenzyme | Cysteine and methionine metabolism |
4:56136753 | 4 | 56,136,753 | 3.66E-07 | Sobic.004G211866 | 15.24 | S-adenosylmethionine decarboxylase proenzyme | Arginine and proline metabolism | |
4:56136753 | 4 | 56,136,753 | 3.66E-07 | Sobic.004G211833 | 8.31 | cytochrome c oxidase subunit 6b-2 | Oxidative phosphorylation |