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Table 1 In silico reconstruction and typing of the plasmidome and comparison with publicly available sequences from public databases NCBI and PLSDB. The plasmids reconstructed by plasmidSPAdes [58] and MOB-recon [59] are reported for each L. monocytogenes CC with predicted mobility based on the MOB-typer module [59]. Only the public sequences with ANI > 99.9% and mash distance < 0.002 were reported from NCBI and PLSDB databases [60], respectively

From: Dynamics of mobile genetic elements of Listeria monocytogenes persisting in ready-to-eat seafood processing plants in France

CC

plasmidSPAdes

MOB-recon

MOB-typer

NCBI

(ANI > 99.9%)

PLSDB

(mash dist < 0.002)

121

62.2a (22; 75%)b

61.1 (27; 93%)

conjugative

pLM6179

pLM6179/ pGMI16–004/ pCFSAN022990

7

81.6 (12; 92%)

81.6 (12; 92%)

mobilizable

pLM80

pCFSAN004330/ pLIS1/ pN1-011A/pCFSAN021445

204

90.8 (22; 92%)

90.8 (22; 92%)

mobilizable

pLM80

pN1-011A/ pCFSAN021445/ pCFSAN004330/pLIS1

155

90.8 (6; 43%)

90.8 (6; 43%)

mobilizable

pLM80

pN1-011A/ pCFSAN021445/ pCFSAN004330/pLIS1

  1. aPlasmid size in kbp; bNumber of positive isolate and corresponding percentage in brackets