Table 2 Toxin transcripts recovered for Bothriechis nigroviridis and associated classifications as orthologs or paralogs, expected transcripts per million reads (TPM) estimated by RSEM, likely over expression classification as detected in intraspecific variation comparisons (i.e., above the 99th percentile of expected variance in expression based on a nontoxin null distribution), and coverage-based assessment of likely presence or absence

Bnigro-BPP-1

Ortholog

29752.98

52897.54

CLP1864

+

+

Bnigro-CTL-1

Ortholog

5601.97

3.99

CLP1856

+

-

Bnigro-CTL-2

Ortholog

47.42

4353.63

CLP1864

-

+

Bnigro-CTL-3

Ortholog

4669.5

3027.69

-

+

+

Bnigro-CTL-4

Paralog

5395.92

4095.4

-

+

+

Bnigro-CTL-5

Paralog

7653.39

26592.73

CLP1864

+

+

Bnigro-CTL-6

Paralog

8809.55

3537.01

-

+

+

Bnigro-CTL-7

Paralog

0

22739.95

CLP1864

-

+

Bnigro-HYAL-1

Ortholog

196.31

76.03

-

+

+

Bnigro-LAAO-1

Ortholog

2070.21

412.19

CLP1856

+

+

Bnigro-NGF-1

Ortholog

836.47

1692.1

-

+

+

Bnigro-NUC-1

Ortholog

1575.76

1532.59

-

+

+

Bnigro-PDE-1

Ortholog

1356.81

524.9

-

+

+

Bnigro-PLA₂-1

Ortholog

53023.62

183732.85

CLP1864

+

+

Bnigro-PLA₂-2

Ortholog

102035.05

235935.29

CLP1864

+

+

Bnigro-SVMPII-1

Ortholog

3405.08

327.07

CLP1856

+

-

Bnigro-SVMPII-2

Ortholog

4055.07

290.21

CLP1856

+

-

Bnigro-SVMPII-3

Ortholog

3980.17

24.59

CLP1856

+

-

Bnigro-SVMPII-4

Paralog

52404.14

11942.88

-

+

+

Bnigro-SVMPIII-1

Ortholog

0.68

73.09

CLP1864

-

+

Bnigro-SVMPIII-2

Ortholog

2157.48

151.17

CLP1856

+

+

Bnigro-SVMPIII-3

Ortholog

12908.06

124.4

CLP1856

+

+

Bnigro-SVMPIII-4

Ortholog

6587.36

2375.96

CLP1856

+

-

Bnigro-SVMPIII-5

Ortholog

48324.54

19456.86

-

+

+

Bnigro-SVSP-1

Ortholog

5067.97

24092.29

CLP1864

+

+

Bnigro-SVSP-2

Ortholog

4588.27

3441.02

-

+

+

Bnigro-SVSP-3

Ortholog

1633.58

4877.37

CLP1864

+

+

Bnigro-SVSP-4

Ortholog

1174.85

19016.69

CLP1864

+

+

Bnigro-SVSP-5

Ortholog

552.15

644.59

-

+

+

Bnigro-SVSP-6

Ortholog

1712.44

8567.09

CLP1864

-

+

Bnigro-SVSP-7

Ortholog

792.67

4112.06

CLP1864

+

+

Bnigro-SVSP-8

Ortholog

17931.94

0.41

CLP1856

+

-

Bnigro-SVSP-9

Paralog

11.35

25032.15

CLP1864

-

+

Bnigro-SVSP-10

Paralog

183.43

2875.45

CLP1864

+

+

Bnigro-SVSP-11

Paralog

2827.4

0.16

CLP1856

+

-

Bnigro-SVSP-12

Paralog

3.89

8988.68

CLP1864

-

+

Bnigro-SVSP-13

Paralog

21317.45

0

CLP1856

+

-

Bnigro-VEGF-1

Ortholog

56.56

17963.5

CLP1864

+

+

Bnigro-VEGF-2

Ortholog

33.93

117.99

-

+

+

Bnigro-VEGF-3

Ortholog

14.81

62.5

-

+

+

Bnigro-VEGF-4

Ortholog

25.22

77.81

-

+

+

Bnigro-Vespryn-1

Paralog

8.98

45.01

-

+

+

Bnigro-Waprin-1

Ortholog

24.92

36.31

-

+

+