Table 1 Three types of significant genetic units identified for 17 traits using the Single-RunKing software
Traits | QTL | Chr | Position (bp) | haplotypes | SNPs | −log10(p) | Heritability (%) | Candidate gene |
|---|---|---|---|---|---|---|---|---|
TMAL | Block5106 | 7 | 154,269,126~154,269,135 | 4 | 2 | 6.83* | 1.98 | GRMZM5G835323 |
Block5106_rare | 7.79* | 0.54 | ||||||
LNAE | Block6251 | 4 | 216,248,578~216,248,659 | 4 | 3 | 6.00 | GRMZM2G138881 | |
Block6251_2 | 7.32* | 7.43 | ||||||
chr4.S_216,248,578 | 216,248,578 | 7.29* | 7.33 | |||||
chr4.S_216,248,611 | 216,248,611 | 7.18* | 7.38 | |||||
CD | Block6253 | 4 | 216,318,748~216,319,308 | 5 | 3 | 7.60* | 10.69 | GRMZM2G477205 |
Block6253_rare | 8.84* | 10.16 | ||||||
KNPR | Block4589 | 3 | 156,814,466~156,936,687 | 4 | 2 | 6.35* | 6.64 | GRMZM2G336909 GRMZM2G089952 |
DTH | Block7921 | 3 | 211,147,258~211,147,654 | 6 | 7 | 5.47 | GRMZM2G422651 | |
Block7921_rare | 7.45* | 7.62 |