Fig. 3
From: GenomeQC: a quality assessment tool for genome assemblies and gene structure annotations
Summaries and graphical output by GenomeQC. a and b include standard assembly and annotation metrics generated for maize reference lines B73, W22 and Mo17. c is an NG(X) graph in which the x-axis charts NG(X) threshold values (1 to 100%) and the y-axis shows scaffold lengths. Each curve represents scaffold lengths of assemblies at different NG levels with a bold vertical line at the commonly used NG50 value. d shows the relative proportion of complete and single copy (blue), complete and duplicated (orange), fragmented (green), and missing (red) Benchmark Universal Single Copy Ortholog (BUSCO) genes identified for the assembly (left) and gene annotation set (right) of the above-mentioned maize lines