Table 3 Python packages used in the GenomeQC web-application and standalone application
From: GenomeQC: a quality assessment tool for genome assemblies and gene structure annotations
Python package | Short Description |
|---|---|
Sys, os, argparse, re, traceback, subprocess, collections [28] | Standard libraries and modules that are distributed with the python installation. These packages provide access to system-specific parameters and functions, functionality to interact with the operating systems, parse command line arguments, etc. |
Bio [29] | Provides functionality for computation of biological sequence data |
Statistics [30] | Provides functionality for mathematical computation |
Numpy [31] | Fundamental package for scientific computing |
Bio.Blast.Applications [13] | Provides the NCBI BLAST command line utility for python |
Iglob [32] | Package to find files in the directory through pattern matching |
Pandas [33] | Python library for data analysis and manipulation |
Plotly.offline plotly.graph_objs [34] | Python package for creating interactive plots |
Matplotlib [35] | Provides plotting functionality to python for data visualization |
email.mime.text, email.mime.application email.mime.multipart, smtplib [36] | Python package that provides email handling functionality to python |