Table 4 The performance comparison on HG38 and the chimpanzee (PanTro4) genome
From: GSAlign: an efficient sequence alignment tool for intra-species genomes
Dataset | Method | Alignment length (Mbp) | SNV# | Indel# | Run time (min) |
|---|---|---|---|---|---|
GRCh38 Vs. PanTro4 | GSAlign | 2412 | 31,710,527 | 3,650,337 | 8 |
Minimap2 | 2791 | 39,242,895 | 4,375,360 | 18 | |
MUMmer4 | 2661 | 41,545,986 | 5,450,956 | 1368 | |
LAST | 2717 | 35,815,610 | 4,483,929 | 884 |