Table 3 Degraded DE genes involving in biosynthesis of secondary metabolites FC is short for fold change (Callus/Tissues), inf and –inf indicated they were not detected in Tissues and Callus cells respectively. AO1 (abscisic aldehyde oxidase 1), DLO2 (DMR6-like oxygenase 2), FLS (Flavonol synthase), PLR1 (Pyridoxal reductase 1), SNL6 (Cinnamoyl-CoA reductase-like SNL6), PER25 (Peroxidase 25), CBP1 (Serine carboxypeptidase 1), SDR2b (Short-chain dehydrogenase/reductase 2b) and UGT85A24 (7-deoxyloganetin glucosyltransferase)
KEGG_pathways | miRNA | log2FC (miRNA) | Gene | log2FC (Gene) |
|---|---|---|---|---|
Phenylpropanoid biosynthesis | PC-5p-27911_99 | −2.53 | SNL6 TRINITY_DN44820_c0_g2 | 1.11 |
smo-MIR1083-p5_2ss1TC20GC | −3.26 | PER25 TRINITY_DN34416_c2_g2 | 6.52 | |
nta-MIR398-p3_2ss8AG17TC | -inf | CYP76B6 TRINITY_DN47148_c1_g1 | 4.62 | |
ata-MIR2118b-p3_2ss8CT18AT | -inf | CBP1 TRINITY_DN42316_c1_g3 | 1.65 | |
Carotenoid biosynthesis | cme-MIR166e-p5_2ss9CT19GC | -inf | AO1 TRINITY_DN47212_c1_g1 | 1.36 |
Diterpenoid biosynthesis | mtr-MIR5232-p5_1ss10AG | -inf | CYP71BL1 TRINITY_DN45648_c2_g1 | 1.62 |
mtr-MIR5232-p5_1ss9TC | -inf | CYP71BL1 TRINITY_DN45648_c2_g1 | 1.62 | |
Flavonoid biosynthesis | gma-MIR4995-p5 | −1.69 | DLO2 TRINITY_DN34179_c0_g1 | 8.06 |
osa-miR529b_2ss18GT20TA | -inf | FLS TRINITY_DN45365_c0_g1 | 1.92 | |
ptc-MIR2111a-p5_2ss9AT21GT | −0.84 | PLR1 TRINITY_DN43111_c0_g1 | 3.83 | |
Brassinosteroid biosynthesis | ath-MIR156j-p5_2ss14CT18GT | -inf | CYP720B2 TRINITY_DN47159_c3_g1 | 6.58 |
sbi-MIR437w-p5_2ss4AG18AG | −0.62 | CYP720B2 TRINITY_DN40347_c0_g2 | 5.03 | |
ath-MIR156j-p5_2ss14CT18GT | -inf | CYP720B2 TRINITY_DN42445_c0_g2 | 2.27 | |
Cutin, suberine and wax biosynthesis | PC-3p-388_5924 | 7.12 | CYP86A22 TRINITY_DN41926_c0_g1 | −5.01 |
Monoterpenoid biosynthesis | cme-MIR166e-p5_2ss9CT19GC | -inf | SDR2b TRINITY_DN45132_c0_g1 | 2.81 |
Anthocyanin biosynthesis | smo-MIR1083-p5_2ss1TC20GC | −3.26 | GT4 TRINITY_DN43852_c0_g4 | 7.16 |
Ubiquinone and other terpenoid-quinone biosynthesis | ppt-MIR1030c-p5_1ss18TG | inf | At4g27270 TRINITY_DN35770_c1_g9 | −1.28 |
Benzoxazinoid biosynthesis | PC-3p-23175_128 | −1.11 | UGT85A24 TRINITY_DN45846_c2_g1 | 3.70 |