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Fig. 1 | BMC Genomics

Fig. 1

From: Comparative genomic analysis reveals high intra-serovar plasticity within Salmonella Napoli isolated in 2005–2017

Fig. 1

Core genome alignement-based ML phylogeny of all Clade A genomes. Core genome alignment was used for phylogenetic reconstruction using RAxML (version 7.2.8, [27]) with bootstrapping and Maximum Likelihood (ML) search under the GAMMA model of rate heterogeneity. Tree visualization was obtained using FigTree v1.4.4 [28]. Subtrees were collapsed for ease of interpretation, while bootstrap values are indicated as node labels. Subtrees clearly group isolates belonging to the same serovar. S. Napoli clusters with typhoidal serovars S. Typhi and S. Paratyphi A, separately from all other non-typhoidal serovars

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BMC Genomics

ISSN: 1471-2164

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