Table 10 Relative amount (in per cent) of private polymorphism loci per functional class (absolute number of loci in brackets)
RE | DA2 | DA3 | NR | NI | |
|---|---|---|---|---|---|
3_prime_UTR_variant | 1.2176 (6317) | 1.1844 (1790) | 1.2121 (1516) | 1.2375 (2211) | 1.1192 (1634) |
5_prime_UTR_variant | 0.378 (1961) | 0.3474 (525) | 0.3622 (453) | 0.4125 (737) | 0.3199 (467) |
coding_sequence_variant | 0.0002 (1) | NA (NA) | NA (NA) | 0.0006 (1) | NA (NA) |
downstream_gene_variant | 7.346 (38113) | 7.1572 (10817) | 7.1015 (8882) | 7.2189 (12898) | 6.6622 (9727) |
intergenic_variant | 39.5045 (204959) | 39.6937 (59991) | 41.8575 (52352) | 39.7633 (71045) | 40.8015 (59571) |
intron_variant | 43.3518 (224920) | 43.5875 (65876) | 41.7496 (52217) | 43.179 (77148) | 43.6521 (63733) |
missense_variant | 0.4587 (2380) | 0.4268 (645) | 0.4302 (538) | 0.525 (938) | 0.389 (568) |
start_lost | 0.001 (5) | 0.0013 (2) | NA (NA) | NA (NA) | 0.0007 (1) |
stop_gained | 0.0021 (11) | 0.0053 (8) | 0.0048 (6) | 0.0022 (4) | 0.0048 (7) |
stop_gained,splice_region_variant | NA (NA) | NA (NA) | NA (NA) | NA (NA) | NA (NA) |
stop_gained,start_lost | NA (NA) | NA (NA) | NA (NA) | NA (NA) | NA (NA) |
stop_lost | 0.0008 (4) | 0.0007 (1) | NA (NA) | 0.0011 (2) | NA (NA) |
synonymous_variant | 0.6557 (3402) | 0.6213 (939) | 0.5525 (691) | 0.6571 (1174) | 0.5082 (742) |
upstream_gene_variant | 7.0837 (36752) | 6.9746 (10541) | 6.7297 (8417) | 7.0029 (12512) | 6.5424 (9552) |