Skip to main content

Table 1 Error rates calculated by comparing four sets of duplicated samples. D1/D2: ratio of reads from Duplicate 1 to Duplicate 2. Locus misassignment rate: the percentage of unidentified loci, calculated by dividing the number of loci found only in one of the duplicates by the total number of loci in each sample. Allele misassignment rate: the percentage of mismmatches between the IUPAC consensus sequences between homologous loci from each pair of duplicates. SNP error rate 1: the percentage of different SNPs called in each of the duplicated samples using either 10178 SNPs. Shared SNP error rate: the percentage of different SNPs called in each of the duplicated samples after excluding missing data between duplicate samples

From: Population structure of Apodemus flavicollis and comparison to Apodemus sylvaticus in northern Poland based on RAD-seq

 F06-B02A12-F12H11-G06G02-D01MEANSD
Reads (D1/D2)0.193.541.291.380  
Coverage8.93/11.2015.95/10.228.05/10.517.62/8.54  
Locus misassignment rate0.100.080.040.040.070.031
Allele misassignment rate0.080.060.070.050.070.01
SNP error rate 10.150.120.050.070.100.04
Shared SNP error rate0.0060.0040.0070.0040.0050.002