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Table 2 Average runtime (seconds) on 1000-species datasets with high ILS, using NJst starting trees and ASTRAL constraint trees

From: Unblended disjoint tree merging using GTM improves species tree estimation

 

GTM

NJMerge

TreeMerge

10 Exons (n=20)

0.47

X

655

10 Introns (n=20)

0.55

X

524

25 Exons (n=20)

0.46

X

504

25 Introns (n=20)

0.46

X

509

1000 Exons (n=20)

0.47

1950

N/A

1000 Introns (n=20)

0.47

1879

N/A

  1. The value for n is the number of replicates being compared, where both GTM and TreeMerge finished. NJMerge and TreeMerge timings were unavailable for 1000 genes. NJMerge failed on all 10 and 25-gene high ILS replicates
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BMC Genomics

ISSN: 1471-2164

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