Table 1 Summary of read numbers from stem and leaf in sdm2 and FH1
From: Transcriptome profiling provides insights into molecular mechanism in Peanut semi-dwarf mutant
Sample name | Reads in stem | Reads in leaf | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
FH1_S_1 | FH1_S_2 | FH1_S_3 | sdm2_S_1 | sdm2_S_2 | sdm2_S_3 | FH1_L_1 | FH1_L_2 | FH1_L_3 | sdm2_L_1 | sdm2_L_2 | sdm2_L_3 | |
Total raw read(M) | 21.64 | 21.66 | 21.67 | 21.65 | 21.84 | 21.67 | 21.86 | 21.61 | 21.74 | 21.65 | 21.64 | 21.71 |
Total clean read(M) | 21.51 | 21.54 | 21.56 | 21.53 | 21.74 | 21.52 | 21.78 | 21.50 | 21.65 | 21.47 | 21.53 | 21.60 |
Clean read ratio(%) | 99.41 | 99.46 | 99.48 | 99.48 | 99.56 | 99.30 | 99.60 | 99.51 | 99.60 | 99.19 | 99.50 | 99.49 |
Clean read q20(%) | 98.25 | 98.22 | 98.16 | 98.20 | 98.06 | 98.07 | 98.27 | 98.15 | 98.21 | 98.31 | 98.11 | 98.24 |
Clean read q30(%) | 90.52 | 90.37 | 90.10 | 90.36 | 89.52 | 89.81 | 90.28 | 90.06 | 90.11 | 90.76 | 89.85 | 90.29 |
Total mapping genome reads (M) | 20.34 | 20.53 | 20.72 | 20.56 | 20.82 | 20.15 | 17.95 | 17.05 | 19.40 | 19.03 | 16.41 | 18.30 |
Total mapping genome ratio(%) | 94.56 | 95.33 | 96.09 | 95.49 | 95.79 | 93.63 | 82.42 | 79.30 | 89.60 | 88.65 | 76.20 | 84.70 |
Total mapping gene reads (M) | 16.93 | 16.75 | 17.45 | 17.17 | 17.32 | 16.46 | 14.63 | 14.24 | 15.77 | 16.41 | 13.93 | 15.02 |
Total mapping gene ratio (%) | 78.69 | 77.77 | 80.95 | 79.73 | 79.65 | 76.51 | 67.17 | 66.24 | 72.86 | 76.45 | 64.68 | 69.56 |