Fig. 2

Phylogenetic tree based on putative autonomous sequences of Capsicum using the maximum likelihood method with bootstrap 1000. CRM sequences organize four groups (grey, see also the Figure S2) and Athila sequences two groups (blue, see also the Figure S3). The Del sequences were organized in two well-supported groups (orange), corroborating with the MAUVE alignment (Figure S1), and the third group of sequences without well-supported values (green), except for the sequences Del_7 and Del_9 (Figure S1) corroborating with the MAUVE alignment