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Table 2 The first quartile, median, and third quartile of the accuracy of imputation of CNVs grouped by called copy number and breed. The number of CNVs in each group is also given. Summary statistics for duplications (n = 4) were not included because for each duplication the imputed copy number did not match the called copy number

From: Concordance rate between copy number variants detected using either high- or medium-density single nucleotide polymorphism genotype panels and the potential of imputing copy number variants from flanking high density single nucleotide polymorphism haplotypes in cattle

 

Breed

First quartile

Median

Third quartile

Number of CNVs

Double deletions

Charolais

0.110

0.167

0.500

9

Limousin

0.000

0.000

0.167

15

Holstein-Friesian

0.000

0.083

0.167

15

Single deletions

Charolais

0.096

0.397

0.705

34

Limousin

0.083

0.241

0.509

38

Holstein-Friesian

0.004

0.092

0.300

22

Normal

Charolais

0.974

.991

0.997

36

Limousin

0.978

0.985

0.994

40

Holstein-Friesian

0.974

0.987

0.994

24