Table 2 InDel decomposition with runtime and memory usage for mammalian-sized genomes
From: Tracy: basecalling, alignment, assembly and deconvolution of sanger chromatogram trace files
Clone | Genome | CHROM | POS | REF | ALT | runtime | memory |
|---|---|---|---|---|---|---|---|
Fxr1_#1 | GRCm38 | 3 | 34065038 | AGAAGATAGACAGCCAGGTA | A | 2 sec | 1.8 GB |
Fxr1_#2 | GRCm38 | 3 | 34065050 | G | GG | 2 sec | 1.8 GB |
MBTPS1_#1 | GRCh38 | 16 | 84101632 | ACTGTT...30nuc...GAACAGCCAGGGC | A | 3 sec | 2.1 GB |
| Â | GRCh38 | 16 | 84101633 | CTGTTG...30nuc...AACAGCCAGGGC | C | 3 sec | 2.1 GB |
MBTPS1_#2 | GRCh38 | 16 | 84101631 | AACTGT...30nuc...GGAACAGCCAGGG | A | 3 sec | 2.1 GB |
| Â | GRCh38 | 16 | 84101634 | TGTTGA...30nuc...ACAGCCAGGGC | T | 3 sec | 2.1 GB |
MBTPS1_#3 | GRCh38 | 16 | 84101631 | AACTGT...30nuc...GGAACAGCCAGGGCA | A | 3 sec | 2.1 GB |
| Â | GRCh38 | 16 | 84101633 | CTGTTG...30nuc...AACAGCCAGGGC | C | 3 sec | 2.1 GB |