Table 1 Domain organizations of PUB proteins in cotton
From: Genome-wide identification and expression analysis of PUB genes in cotton
No. | Composition of domain (from N end to C end) | Number of proteins | |||
|---|---|---|---|---|---|
G.raimondii | G.arboreum | G. hirsutum | G. barbadense | ||
1 | UFD2 specific motif + U-box | 1 | 1 | 2 | 2 |
2 | U-box + ARM | 43 | 45 | 78 | 90 |
3 | U-box only | 33 | 35 | 68 | 83 |
4 | STYKc + U-box | 3 | 3 | 6 | 7 |
5 | S_TKc + U-box | 3 | 3 | 6 | 6 |
6 | U-box + Prp19 + WD40 | 3 | 2 | 3 | 6 |
7 | U-box + WD40 | 2 | 2 | 6 | 3 |
8 | TPR + U-box | 1 | 2 | 3 | 3 |
9 | U-box + PPIase | 1 | 1 | 2 | 2 |
10 | U-box + KAP | 1 | 0 | 1 | 0 |
11 | UspA + S_TKc + U-box | 2 | 2 | 2 | 2 |
12 | UspA + STYKc + U-box | 0 | 0 | 2 | 1 |
13 | NRAMP + U-box + ARM | 0 | 0 | 2 | 0 |
14 | Ank + U-box + ARM | 0 | 0 | 1 | 0 |
15 | Ank + U-box + ARM + Ank | 0 | 0 | 1 | 0 |
16 | RPOL_N + RNA_pol + U-box + ARM | 0 | 0 | 1 | 0 |
17 | U-box + WD40 + S_TKc | 0 | 0 | 1 | 0 |
18 | EGF + PAN_AP + U-box + ARM | 0 | 0 | 0 | 1 |
19 | U-box + Arm + DNA_pol3 | 0 | 0 | 0 | 1 |
20 | Pkinase + U-box | 0 | 0 | 0 | 1 |