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Table 1 Summary statistics for quality assessment of the assemblies obtained with SR-seq and hybrid-seq

From: Hybrid transcriptome sequencing approach improved assembly and gene annotation in Cynara cardunculus (L.)

 

SR-seq

Hybrid-seq

No. of transcripts

480,403

487,898

Transcripts > 500 bp

175,817

194,860

rnaQUAST metrics

 Aligned transcripts

230,373

238,818

 50%-assembled genes

19,355

19,486

 95%-assembled genes

12,932

14,884

TransRate metrics

 95% covered genes

13,038

13,800

 Segmented contigs

56,825

18,422

 N50

1803

2342

 Optimal score

0.11

0.26

BUSCO metrics

 Complete BUSCOs

1238

1330

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BMC Genomics

ISSN: 1471-2164

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