Table 2 Comparison of annotations of SR-seq and hybrid-seq assemblies refined and updated by PASA software. Existing artichoke genome annotation was used as reference
| Â | SR-seq | Hybrid-seq |
|---|---|---|
Newly annotated genes | 502 | 578 |
 Entirely new | 302 | 551 |
 Split genes | 200 | 227 |
Updated genes | 13,796 | 12,924 |
 Alternative gene structure | 8107 | 7769 |
 UTR alternation | 4838 | 4332 |
 Protein modification | 939 | 870 |
 Gene merging | 114 | 115 |
Alternatively spliced isoforms | 8945 | 10,613 |
Proteins modified | 9341 | 8960 |