Table 1 Run times for the different methods, showing the time spent on processing 576 million reads using 24 computing threads
Linear mapper | 12h 51m |
- BWA-MEM (tuned) | 7h1m |
- Minimap (tuned) | 4h40m |
- Merging alignments | 1h10m |
Two-step approach | 24h50m |
- Initial rough mapping | 6h8m |
- Predict path through graph and indexing the path with BWA-MEM | 1h21m |
- Running linear mapper on path | 12h51m |
- Post-processing alignments (including conversion to linear reference genome coordinates) | 4h30m |
vg | 28h52m |