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Table 2 Precision and recall when running Graphtyper with reads mapped by the different methods

From: Assessing graph-based read mappers against a baseline approach highlights strengths and weaknesses of current methods

 Linear mapperTwo-step approachvg
Indels recall71.30%72.21%72.31%
Indels precision94.30%94.30%94.14%
SNPs recall94.64%95.85%96.21%
SNPs precision99.35%99.27%98.31%