Table 2 Precision and recall when running Graphtyper with reads mapped by the different methods
| Â | Linear mapper | Two-step approach | vg |
|---|---|---|---|
Indels recall | 71.30% | 72.21% | 72.31% |
Indels precision | 94.30% | 94.30% | 94.14% |
SNPs recall | 94.64% | 95.85% | 96.21% |
SNPs precision | 99.35% | 99.27% | 98.31% |