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Table 10 List of differentially expressed genesa associated with lipid metabolism/cell cycle for the (p) ppGpp0 mutant versus WT at 3 h

From: The stringent response regulator (p) ppGpp mediates virulence gene expression and survival in Erwinia amylovora

AccessionGene DescriptionLog2FCbMeanc
Lipid metabolism
Fatty acid biosynthesis
  EAMY_2423fabB, 3-oxoacyl-(acyl-carrier-protein) synthase2.3811.6
  EAMY_2408accD, acetyl-CoA carboxylase beta subunit1.869.97
  EAMY_2748fabZ, 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases1.468.39
  EAMY_0948yajB, acyl carrier protein phosphodiesterase1.25.16
  EAMY_1242cfa, cyclopropane fatty acid synthase−1.76.96
Fatty acid degradation
  EAMY_2827vraB, 3-ketoacyl-CoA thiolase−1.724.77
  EAMY_0222fadA, acetyl-CoA acetyltransferase−1.2210.1
Cell division
chromosom partition
  EAMY_1925intracellular septation protein A1.87.37
  EAMY_1357mukF, chromosome partition protein1.758.20
  EAMY_2278mrp, ATPases involved in chromosome partitioning1.368.77
  EAMY_1358mukE, chromosome partition protein1.277.22
cell division
  EAMY_1387sulA, cell division inhibitor2.198.22
  EAMY_0129zapB, cell division protein1.28.58
  EAMY_2482zipA, cell division protein1.129.29
  1. aDifferentially expressed genes (DEGs) between the (p) ppGpp0 mutant and WT at 3 h with |log2FC| value ≥ 1 and an adjusted p value < 0.05. FC: fold change. WT: wild type. WT: wild type. FC: fold change. FC values below 0 mean that the gene has lower expression in the (p) ppGpp0 mutant than in WT, and vice versa
  2. blog2FC valus was calculated by the log based 2 value of (p) ppGpp0 / WT at 3 h
  3. cThe average of log2CPM was calculated. CPM: count per million reads