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Fig. 1 | BMC Genomics

Fig. 1

From: Comparative transcriptomic analysis of global gene expression mediated by (p) ppGpp reveals common regulatory networks in Pseudomonas syringae

Fig. 1

Principal component analysis (PCA) and verification of differential expressed genes (DEGs) by Quantitative real-time PCR. a PC1 and PC2 explain data variability of 79.4 and 8.2%, respectively, for PstDC3000 and its (p)ppGpp0 mutant. b PC1 and PC2 explain data variability of 69.8 and 20.8%, respectively, for PssB728a and its (p)ppGpp0 mutant. c Expression of the desA, pspto_1775, infA, avrE1, iaaL and csrA2 genes in the relA/spoT/fpRel ((p)ppGpp0) mutant strain as compared with PstDC3000 grown in hrp-inducing medium at 3 h post-inoculation. d Expression of the cstA, actP, acsA, mtiD, cspC and ksgA genes in the relA/spoT ((p)ppGpp0) mutant strain as compared with PssB728a grown in hrp-inducing medium at 3 h post-inoculation. Numbers on the bar indicate fold change by RNA-seq

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BMC Genomics

ISSN: 1471-2164

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