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Table 3 List of T6SS genes differentially regulated by (p) ppGpp in PstDC3000 and PssB728a

From: Comparative transcriptomic analysis of global gene expression mediated by (p) ppGpp reveals common regulatory networks in Pseudomonas syringae

Locus tagDescription(p)ppGpp0PstDC3000 /PstDC3000(p)ppGpp0PssB728a /PssB728a
DC3000
PSPTO_2539secreted protein Hcp-1−1.37/
PSPTO_2550hypothetical protein PSPTO_2550−1.83/
PSPTO_2553hypothetical protein PSPTO_2553−1.38/
PSPTO_4385Rhs element Vgr protein−1.26/
PSPTO_5415Rhs element Vgr protein−1.79/
PSPTO_5416serine/threonine protein kinase−1.63/
PSPTO_5417serine/threonine phosphoprotein phosphatase−2.81/
PSPTO_5418hypothetical protein PSPTO_5418−2.85/
PSPTO_5419hypothetical protein PSPTO_5419−2.85/
PSPTO_5420hypothetical protein PSPTO_5420−2.48/
PSPTO_5421lipoprotein−2.84/
PSPTO_5422FHA domain-containing protein−2.25/
PSPTO_5423hypothetical protein PSPTO_5423−2.01/
PSPTO_5424sigma-54 dependent transcriptional regulator−1.67/
PSPTO_5425ClpB protein−1.82/
PSPTO_5426hypothetical protein PSPTO_5426−1.96/
PSPTO_5427hypothetical protein PSPTO_5427−2.16/
PSPTO_5430hypothetical protein PSPTO_5430−1.75/
PSPTO_5435secreted protein Hcp-2−1.29/
PSPTO_5436Rhs element Vgr protein−2.59/
PSPTO_5437hypothetical protein PSPTO_5437−2.91/
PSPTO_5438Rhs family protein−1.77/
B728a
PSYR_1935hypothetical protein PSYR_1935/−1.04
PSYR_2632virulence protein SrfB/−3.45
PSYR_2633hypothetical protein PSYR_2633/−1.76
PSYR_4955hypothetical protein PSYR_4955/−1.57
PSYR_4956hypothetical protein PSYR_4956/−2.04
PSYR_4957hypothetical protein PSYR_4957/−2.66
PSYR_4958ATPase AAA/−3.3
PSYR_4959hypothetical protein PSYR_4959/−3.23
PSYR_4960hypothetical protein PSYR_4960/−3.61
PSYR_4961hypothetical protein PSYR_4961/−4.21
PSYR_4962hypothetical protein PSYR_4962/−3.88
PSYR_4963hypothetical protein PSYR_4963/−3.12
PSYR_4964OmpA/MotB protein/−2.83
PSYR_4965hypothetical protein PSYR_4965/−4.22
PSYR_4966ImpA-like protein/−3.72
PSYR_4967hypothetical protein PSYR_4967/−2.8
PSYR_4974Rhs element Vgr protein/−1.91
PSYR_4983Rhs element Vgr protein/−2.54
  1. DEGs were differentially expressed genes in the (p)ppGpp0PstDC3000 and (p)ppGpp0PssB728a with p-value < 0.05 between the WT and the ppGpp0 mutants. ‘/’ represents that gene is not present or not significantly regulated