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Table 4 List of homologous genes regulated by (p) ppGpp in opposite ways in PstDC3000 and PssB728a

From: Comparative transcriptomic analysis of global gene expression mediated by (p) ppGpp reveals common regulatory networks in Pseudomonas syringae

Locus tag Gene description(p)ppGpp0PstDC3000/PstDC3000(p)ppGpp0PssB728a/PssB728a
DC3000B728A   
PSPTO_1432PSYR_1246type IV pilus biogenesis protein PilF1.29−0.85
PSPTO_1940PSYR_3475flagellar basal-body rod protein FlgG0.45−1.27
PSPTO_1941PSYR_3474flagellar L-ring protein FlgH0.61−1.36
PSPTO_1973PSYR_3443flagellar biosynthetic protein FliQ0.22−1.36
PSPTO_1942PSYR_3473flagellar P-ring protein FlgI0.36−1.43
PSPTO_1713PSYR_3676cobyric acid synthase CobQ1.82− 0.20
PSPTO_1714PSYR_3675cobinamide kinase/cobinamide phosphate guanylyltransferase CobP1.56−0.57
PSPTO_1717PSYR_3672cobalamin (5\’-phosphate) synthase CobS1.02−1.04
PSPTO_1715PSYR_3674nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase CobT1.66−1.08
PSPTO_0352PSYR_4822nitrogen regulation protein NR(I) NtrC−0.601.61
PSPTO_0353PSYR_4821nitrogen regulation protein NtrB−0.292.47
PSPTO_3315PSYR_3149general secretion pathway protein G, GspG−0.671.69
PSPTO_3314PSYR_3148general secretion pathway protein H, GspH−0.701.40
PSPTO_3317PSYR_3151general secretion pathway protein E−0.361.36
PSPTO_3316PSYR_3150general secretion pathway protein F, GspE−0.691.34
PSPTO_3313PSYR_3147general secretion pathway protein I, GspI−0.931.09
PSPTO_3312PSYR_3146general secretion pathway protein J, GspJ−1.010.80
PSPTO_3307PSYR_3141general secretion pathway protein D, GspD−1.180.11
  1. DEGs were differentially expressed genes in the (p)ppGpp0PstDC3000 and (p)ppGpp0PssB728a with p-value < 0.05 between the WT and the (p)ppGpp0 mutants