Table 4 List of homologous genes regulated by (p) ppGpp in opposite ways in PstDC3000 and PssB728a
Locus tag | Â | Gene description | (p)ppGpp0PstDC3000/PstDC3000 | (p)ppGpp0PssB728a/PssB728a |
|---|---|---|---|---|
DC3000 | B728A | Â | Â | Â |
PSPTO_1432 | PSYR_1246 | type IV pilus biogenesis protein PilF | 1.29 | −0.85 |
PSPTO_1940 | PSYR_3475 | flagellar basal-body rod protein FlgG | 0.45 | −1.27 |
PSPTO_1941 | PSYR_3474 | flagellar L-ring protein FlgH | 0.61 | −1.36 |
PSPTO_1973 | PSYR_3443 | flagellar biosynthetic protein FliQ | 0.22 | −1.36 |
PSPTO_1942 | PSYR_3473 | flagellar P-ring protein FlgI | 0.36 | −1.43 |
PSPTO_1713 | PSYR_3676 | cobyric acid synthase CobQ | 1.82 | − 0.20 |
PSPTO_1714 | PSYR_3675 | cobinamide kinase/cobinamide phosphate guanylyltransferase CobP | 1.56 | −0.57 |
PSPTO_1717 | PSYR_3672 | cobalamin (5\’-phosphate) synthase CobS | 1.02 | −1.04 |
PSPTO_1715 | PSYR_3674 | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase CobT | 1.66 | −1.08 |
PSPTO_0352 | PSYR_4822 | nitrogen regulation protein NR(I) NtrC | −0.60 | 1.61 |
PSPTO_0353 | PSYR_4821 | nitrogen regulation protein NtrB | −0.29 | 2.47 |
PSPTO_3315 | PSYR_3149 | general secretion pathway protein G, GspG | −0.67 | 1.69 |
PSPTO_3314 | PSYR_3148 | general secretion pathway protein H, GspH | −0.70 | 1.40 |
PSPTO_3317 | PSYR_3151 | general secretion pathway protein E | −0.36 | 1.36 |
PSPTO_3316 | PSYR_3150 | general secretion pathway protein F, GspE | −0.69 | 1.34 |
PSPTO_3313 | PSYR_3147 | general secretion pathway protein I, GspI | −0.93 | 1.09 |
PSPTO_3312 | PSYR_3146 | general secretion pathway protein J, GspJ | −1.01 | 0.80 |
PSPTO_3307 | PSYR_3141 | general secretion pathway protein D, GspD | −1.18 | 0.11 |