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Table 5 List of potential candidate genes and anchoring markers associated with physiological traits

From: Genetic dissection of heat-responsive physiological traits to improve adaptation and increase yield potential in soft winter wheat

SNP

SNP

Dataset

-log10(p)

Effect

PVE

Alleles

Gene-ID

Annotation

S1B_4335636

SPAD

BLUEA

3.46

1.19

0.17

G/A

TraesCS1B01G007900

E3 ubiquitin-protein ligase ORTHRUS 2

BLUEC

3.01

1.20

0.14

   

S1D_907114

SPAD

BLUEA

3.65

1.74

0.18

G/C

TraesCS1D01G003300

SNF1-related protein kinase regulatory subunit beta-2

BLUEQ

3.13

2.33

0.14

   

S1D_907133

SPAD

BLUEA

3.65

1.74

0.18

G/C

TraesCS1D01G003300

SNF1-related protein kinase regulatory subunit beta-2

BLUEQ

3.13

2.33

0.14

   

S2D_574118879

SPAD

BLUEA

3.98

2.78

0.19

A/G

TraesCS2D01G469000

GDSL-like Lipase/Acylhydrolase superfamily protein

BLUEQ

3.09

3.53

0.14

   

S2D_11171031

SPAD

BLUEC

3.48

1.42

0.15

T/C

TraesCS2D01G026300

Glutamyl-tRNA (Gln) amidotransferase subunit A

BLUEA

3.07

1.21

0.17

   

S4A_625244392

SPAD

BLUEA

3.35

1.63

0.17

C/T

TraesCS4A01G346600

F-box protein

BLUEC

3.22

1.75

0.14

   

S5D_220760001

SPAD

BLUEC

3.34

1.64

0.14

G/A

TraesCS5D01G138700

disease resistance protein (TIR-NBS-LRR class) family

BLUEA

3.18

1.46

0.17

   

S6D_16178496

SPAD

BLUEA

3.59

−1.66

0.19

C/T

TraesCS6D01G038900

2-oxoglutarate (2OG) and Fe (II)-dependent oxygenase superfamily protein

BLUEC

3.55

−1.81

0.16

   

S6D_16178499

SPAD

BLUEA

3.59

−1.66

0.19

A/T

TraesCS6D01G038900

2-oxoglutarate (2OG) and Fe (II)-dependent oxygenase superfamily protein

BLUEC

3.55

−1.81

0.16

   

S6D_16178505

SPAD

BLUEA

3.59

−1.66

0.19

A/C

TraesCS6D01G038900

2-oxoglutarate (2OG) and Fe (II)-dependent oxygenase superfamily protein

BLUEC

3.55

−1.81

0.16

   

S6B_462165779

SPAD

BLUEA

4.15

1.34

0.18

C/G

TraesCS6B01G257900

Adenosine kinase-like protein

BLUEC

3.19

1.27

0.14

   

S7A_565347529

SPAD

BLUEA

4.54

1.38

0.19

T/G

TraesCS7A01G389100

TBC1 domain family member

BLUEQ

4.38

1.98

0.15

   

S7A_579648980

SPAD

BLUEQ

3.63

−1.78

0.15

C/G

TraesCS7A01G399700

Telomere repeat-binding factor like-protein

BLUEA

3.48

−1.19

0.17

   

S1D_262475151

MT

BLUEC

3.53

4.15

0.07

T/C

TraesCS1D01G190700

Heavy metal transport/detoxification superfamily protein

BLUEA

3.52

4.14

0.10

   

S3D_590224603

MT

BLUEA

4.89

4.60

0.12

T/C

TraesCS3D01G501200

Protein kinase

BLUEC

4.80

4.57

0.09

   

BLUEQ

3.20

4.98

0.12

   

S3D_590224620

MT

BLUEC

3.61

4.21

0.06

G/A

TraesCS3D01G501200

Protein kinase

BLUEA

3.12

3.87

0.09

   

S5B_487440465

MT

BLUEQ

3.36

4.36

0.11

A/C

TraesCS5B01G302900

Plant/T31B5–30 protein

BLUEA

3.23

3.11

0.09

   

S5B_509105168

MT

BLUEQ

4.25

−6.33

0.14

A/G

TraesCS5B01G325000

F-box family protein

BLUEA

3.78

−4.32

0.11

   

S5B_509105191

MT

BLUEQ

4.25

6.33

0.14

T/C

TraesCS5B01G325000

F-box family protein

BLUEA

3.78

4.32

0.11

   

S6B_42215716

MT

BLUEC

3.46

6.04

0.07

A/G

TraesCS6B01G063500

Peroxidase

BLUEA

3.08

5.64

0.09

   

S2B_693094464

CT

BLUEC

3.83

−0.24

0.10

G/A

TraesCS2B01G496300

BTB/POZ and MATH domain-containing protein 2

BLUEA

3.10

−0.16

0.08

   

S2B_693094466

CT

BLUEC

3.83

−0.24

0.10

G/A

TraesCS2B01G496300

BTB/POZ and MATH domain-containing protein 2

BLUEA

3.10

−0.16

0.08

   

S5B_610295429

CT

BLUEA

4.41

0.29

0.12

T/G

TraesCS5B01G436700

Lipid transfer protein

BLUEQ

4.27

0.34

0.11

   

S5B_608350950

CT

BLUEQ

4.85

−0.34

0.12

C/T

TraesCS5B01G433700

Maintenance of telomere capping protein 2

BLUEA

3.19

−0.23

0.09

   

S5B_621237427

CT

BLUEQ

4.37

−0.34

0.11

C/T

TraesCS5B01G448700

Mitochondrial transcription termination factor-like

BLUEA

3.22

−0.24

0.10

   

S5B_606014586

CT

BLUEQ

3.37

0.30

0.10

T/C

TraesCS5B01G431300

Peptidase M50 family protein

BLUEA

3.03

0.23

0.10

   

S5B_602833771

CT

BLUEA

3.70

−0.24

0.11

C/T

TraesCS5B01G426900

DNA topoisomerase

BLUEQ

3.64

−0.28

0.10

   

S5B_617291841

CT

BLUEA

4.79

−0.30

0.13

A/G

TraesCS5B01G445300

Endo-1,4-beta-xylanase

BLUEQ

3.51

−0.30

0.10

   

S5B_643470598

CT

BLUEA

3.16

0.18

0.10

G/A

TraesCS5B01G470200

Protein phosphatase 2C

BLUEQ

3.07

0.22

0.08

   

S5B_601343966

CT

BLUEA

3.17

−0.24

0.11

C/T

TraesCS5B01G425500

Zinc finger CCCH domain-containing protein 16

BLUEQ

3.14

−0.29

0.10

   

S2B_717098540

NDVIa

BLUEC

8.41

−0.02

0.22

C/T

TraesCS2B01G522200

SAUR-like auxin-responsive protein family

BLUEA

4.17

−0.01

0.18

   

S1B_677572998

NDVIg

BLUEA

3.48

0.02

0.12

C/G

TraesCS1B01G467900

Methyltransferase

BLUEQ

3.32

0.03

0.07

   

S2D_570960728

NDVIg

BLUEQ

3.79

−0.03

0.07

A/C

TraesCS2D01G464800

Multidrug resistance protein ABC transporter family protein

BLUEA

3.13

−0.02

0.13

   

S3A_737114441

NDVIg

BLUEQ

3.49

0.02

0.07

T/C

TraesCS3A01G519100

rRNA N-glycosidase

BLUEA

3.41

0.02

0.14

   

S3B_785311773

NDVIg

BLUEQ

3.34

0.01

0.07

A/G

TraesCS3B01G550500

Myb/SANT-like DNA-binding domain protein

BLUEA

3.01

0.01

0.13

   

S5B_583295527

NDVIg

BLUEC

6.60

0.02

0.12

A/G

TraesCS5B01G407600

Myb family transcription factor-like protein

BLUEA

5.00

0.02

0.16

   

S7B_426882778

NDVIg

BLUEQ

3.28

0.03

0.08

A/G

TraesCS7B01G226400

RING finger protein 13

BLUEA

3.01

0.02

0.14

   

S3B_785311769

NDVIa

BLUEC

6.02

0.00

0.22

A/G

TraesCS3B01G550500

Myb/SANT-like DNA-binding domain protein

NDVIg

BLUEQ

3.34

0.01

0.07

   
 

NDVIg

BLUEA

3.01

0.01

0.13

   

S7B_701649275

NDVIa

BLUEA

5.82

0.00

0.20

C/T

TraesCS7B01G434600

FBD-associated F-box protein

NDVIg

BLUEA

3.78

0.01

0.15

   

S3A_699988530

NDVIg

BLUEQ

4.46

−0.04

0.12

A/G

TraesCS3A01G466000

F-box family protein

 

BLUEA

3.48

−0.03

0.16

   

S7D_635578722

NDVIg

BLUEC

4.17

0.02

0.11

T/C

TraesCS7D01G552700

NBS-LRR disease resistance protein

NDVIa

BLUEA

3.49

0.01

0.18

   

SPAD

BLUEQ

3.41

−3.40

0.15

   

NDVIa

BLUEQ

3.34

0.02

0.09

   

NDVIg

BLUEA

3.15

0.03

0.15

   
  1. SPAD, soil-plant analyses development; MT, cell membrane thermostability; CT, canopy temperature (°C); NDVIa, normalized difference vegetation index at GS65; NDVIg, normalized difference vegetation index at grain filling. BLUEC, BLUEs values derived across Citra; BLUEQ, BLUEs values derived across Quincy, and BLUEA: BLUEs values derived across all environment; PVE, phenotypic variance explained
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BMC Genomics

ISSN: 1471-2164

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