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Table 5 List of potential candidate genes and anchoring markers associated with physiological traits

From: Genetic dissection of heat-responsive physiological traits to improve adaptation and increase yield potential in soft winter wheat

SNPSNPDataset-log10(p)EffectPVEAllelesGene-IDAnnotation
S1B_4335636SPADBLUEA3.461.190.17G/ATraesCS1B01G007900E3 ubiquitin-protein ligase ORTHRUS 2
BLUEC3.011.200.14   
S1D_907114SPADBLUEA3.651.740.18G/CTraesCS1D01G003300SNF1-related protein kinase regulatory subunit beta-2
BLUEQ3.132.330.14   
S1D_907133SPADBLUEA3.651.740.18G/CTraesCS1D01G003300SNF1-related protein kinase regulatory subunit beta-2
BLUEQ3.132.330.14   
S2D_574118879SPADBLUEA3.982.780.19A/GTraesCS2D01G469000GDSL-like Lipase/Acylhydrolase superfamily protein
BLUEQ3.093.530.14   
S2D_11171031SPADBLUEC3.481.420.15T/CTraesCS2D01G026300Glutamyl-tRNA (Gln) amidotransferase subunit A
BLUEA3.071.210.17   
S4A_625244392SPADBLUEA3.351.630.17C/TTraesCS4A01G346600F-box protein
BLUEC3.221.750.14   
S5D_220760001SPADBLUEC3.341.640.14G/ATraesCS5D01G138700disease resistance protein (TIR-NBS-LRR class) family
BLUEA3.181.460.17   
S6D_16178496SPADBLUEA3.59−1.660.19C/TTraesCS6D01G0389002-oxoglutarate (2OG) and Fe (II)-dependent oxygenase superfamily protein
BLUEC3.55−1.810.16   
S6D_16178499SPADBLUEA3.59−1.660.19A/TTraesCS6D01G0389002-oxoglutarate (2OG) and Fe (II)-dependent oxygenase superfamily protein
BLUEC3.55−1.810.16   
S6D_16178505SPADBLUEA3.59−1.660.19A/CTraesCS6D01G0389002-oxoglutarate (2OG) and Fe (II)-dependent oxygenase superfamily protein
BLUEC3.55−1.810.16   
S6B_462165779SPADBLUEA4.151.340.18C/GTraesCS6B01G257900Adenosine kinase-like protein
BLUEC3.191.270.14   
S7A_565347529SPADBLUEA4.541.380.19T/GTraesCS7A01G389100TBC1 domain family member
BLUEQ4.381.980.15   
S7A_579648980SPADBLUEQ3.63−1.780.15C/GTraesCS7A01G399700Telomere repeat-binding factor like-protein
BLUEA3.48−1.190.17   
S1D_262475151MTBLUEC3.534.150.07T/CTraesCS1D01G190700Heavy metal transport/detoxification superfamily protein
BLUEA3.524.140.10   
S3D_590224603MTBLUEA4.894.600.12T/CTraesCS3D01G501200Protein kinase
BLUEC4.804.570.09   
BLUEQ3.204.980.12   
S3D_590224620MTBLUEC3.614.210.06G/ATraesCS3D01G501200Protein kinase
BLUEA3.123.870.09   
S5B_487440465MTBLUEQ3.364.360.11A/CTraesCS5B01G302900Plant/T31B5–30 protein
BLUEA3.233.110.09   
S5B_509105168MTBLUEQ4.25−6.330.14A/GTraesCS5B01G325000F-box family protein
BLUEA3.78−4.320.11   
S5B_509105191MTBLUEQ4.256.330.14T/CTraesCS5B01G325000F-box family protein
BLUEA3.784.320.11   
S6B_42215716MTBLUEC3.466.040.07A/GTraesCS6B01G063500Peroxidase
BLUEA3.085.640.09   
S2B_693094464CTBLUEC3.83−0.240.10G/ATraesCS2B01G496300BTB/POZ and MATH domain-containing protein 2
BLUEA3.10−0.160.08   
S2B_693094466CTBLUEC3.83−0.240.10G/ATraesCS2B01G496300BTB/POZ and MATH domain-containing protein 2
BLUEA3.10−0.160.08   
S5B_610295429CTBLUEA4.410.290.12T/GTraesCS5B01G436700Lipid transfer protein
BLUEQ4.270.340.11   
S5B_608350950CTBLUEQ4.85−0.340.12C/TTraesCS5B01G433700Maintenance of telomere capping protein 2
BLUEA3.19−0.230.09   
S5B_621237427CTBLUEQ4.37−0.340.11C/TTraesCS5B01G448700Mitochondrial transcription termination factor-like
BLUEA3.22−0.240.10   
S5B_606014586CTBLUEQ3.370.300.10T/CTraesCS5B01G431300Peptidase M50 family protein
BLUEA3.030.230.10   
S5B_602833771CTBLUEA3.70−0.240.11C/TTraesCS5B01G426900DNA topoisomerase
BLUEQ3.64−0.280.10   
S5B_617291841CTBLUEA4.79−0.300.13A/GTraesCS5B01G445300Endo-1,4-beta-xylanase
BLUEQ3.51−0.300.10   
S5B_643470598CTBLUEA3.160.180.10G/ATraesCS5B01G470200Protein phosphatase 2C
BLUEQ3.070.220.08   
S5B_601343966CTBLUEA3.17−0.240.11C/TTraesCS5B01G425500Zinc finger CCCH domain-containing protein 16
BLUEQ3.14−0.290.10   
S2B_717098540NDVIaBLUEC8.41−0.020.22C/TTraesCS2B01G522200SAUR-like auxin-responsive protein family
BLUEA4.17−0.010.18   
S1B_677572998NDVIgBLUEA3.480.020.12C/GTraesCS1B01G467900Methyltransferase
BLUEQ3.320.030.07   
S2D_570960728NDVIgBLUEQ3.79−0.030.07A/CTraesCS2D01G464800Multidrug resistance protein ABC transporter family protein
BLUEA3.13−0.020.13   
S3A_737114441NDVIgBLUEQ3.490.020.07T/CTraesCS3A01G519100rRNA N-glycosidase
BLUEA3.410.020.14   
S3B_785311773NDVIgBLUEQ3.340.010.07A/GTraesCS3B01G550500Myb/SANT-like DNA-binding domain protein
BLUEA3.010.010.13   
S5B_583295527NDVIgBLUEC6.600.020.12A/GTraesCS5B01G407600Myb family transcription factor-like protein
BLUEA5.000.020.16   
S7B_426882778NDVIgBLUEQ3.280.030.08A/GTraesCS7B01G226400RING finger protein 13
BLUEA3.010.020.14   
S3B_785311769NDVIaBLUEC6.020.000.22A/GTraesCS3B01G550500Myb/SANT-like DNA-binding domain protein
NDVIgBLUEQ3.340.010.07   
 NDVIgBLUEA3.010.010.13   
S7B_701649275NDVIaBLUEA5.820.000.20C/TTraesCS7B01G434600FBD-associated F-box protein
NDVIgBLUEA3.780.010.15   
S3A_699988530NDVIgBLUEQ4.46−0.040.12A/GTraesCS3A01G466000F-box family protein
 BLUEA3.48−0.030.16   
S7D_635578722NDVIgBLUEC4.170.020.11T/CTraesCS7D01G552700NBS-LRR disease resistance protein
NDVIaBLUEA3.490.010.18   
SPADBLUEQ3.41−3.400.15   
NDVIaBLUEQ3.340.020.09   
NDVIgBLUEA3.150.030.15   
  1. SPAD, soil-plant analyses development; MT, cell membrane thermostability; CT, canopy temperature (°C); NDVIa, normalized difference vegetation index at GS65; NDVIg, normalized difference vegetation index at grain filling. BLUEC, BLUEs values derived across Citra; BLUEQ, BLUEs values derived across Quincy, and BLUEA: BLUEs values derived across all environment; PVE, phenotypic variance explained