Fig. 5
From: An integrated software for virus community sequencing data analysis
Outputs from QAP analysis of HCV,H7N9 and HIV QS data. a Hierarchical clustering of mutation sites in the HCV E2 region. b Circos plot of mutations in two H7N9 strains. The outside track corresponds to 8 segments of the viral genome. Tracks in the light grey (dark grey) background colour correspond to strain 5109 (5083) treated with 10 μM, 20 μM, 100 μM, 200 μM and 500 μM oseltamivir. Green (blue) dots represent variations in strain 5109 (5083), and dot size corresponds to mutation frequencies. c Frequencies of mutation sites between pNL4.3 and p89.6 in the mixtures V01 and V02. Bar height corresponds to base abundance. The true ratios are marked with black lines. d Half violin plot of abundances of HBV genotype C viral strain in simulation data sets. The true ratios are marked with blue lines