Table 4 Overview of reads for mRNA-seq of GIFT and quality filtering
Sample | Raw Data | Valid Data | Valid% | Q20% | Q30% | GC% | ||
|---|---|---|---|---|---|---|---|---|
Read | Base | Read | Base | Â | Â | Â | Â | |
HL1 | 39,014,868 | 5.85G | 38,581,554 | 5.79G | 98.89 | 99.79 | 96.62 | 47 |
HL2 | 44,823,970 | 6.72G | 44,305,838 | 6.65G | 98.84 | 99.78 | 96.19 | 46.5 |
HL3 | 51,877,956 | 7.78G | 51,230,978 | 7.68G | 98.75 | 99.65 | 95.33 | 47.5 |
CL1 | 59,054,504 | 8.86G | 57,905,522 | 8.69G | 98.05 | 99.70 | 96.30 | 46.5 |
CL2 | 47,474,440 | 7.12G | 46,781,934 | 7.02G | 98.54 | 99.66 | 95.86 | 47.5 |
CL3 | 43,224,404 | 6.48G | 42,604,052 | 6.39G | 98.56 | 99.76 | 96.54 | 46.5 |