From: Adaptation of codon and amino acid use for translational functions in highly expressed cricket genes
Amino acid | Codon (DNA) | Standard anticodon | ΔRSCU | Pa | No. tRNAs | Optimal and non-optimal status | Wobble anticodon (optimal)b |
---|---|---|---|---|---|---|---|
Ala | GCT | AGC | + 0.871 | ** | 35 | Opt-codon↑tRNAs |  |
Ala | GCC | GGC | −0.344 | ** | 0 | – |  |
Ala | GCA | UGC | + 0.518 | ** | 18 | – |  |
Ala | GCG | CGC | −1.039 | ** | 22 | Nonopt-codon↑tRNAs |  |
Arg | CGT | ACG | + 0.463 | ** | 40 | – |  |
Arg | CGC | GCG | −1.053 | ** | 0 | Nonopt-codon↓tRNAs |  |
Arg | CGA | UCG | + 0.185 | ** | 39 | – |  |
Arg | CGG | CCG | −0.548 | ** | 2 | – |  |
Arg | AGA | UCU | + 0.881 | ** | 18 | Opt-codon↑tRNAs |  |
Arg | AGG | CCU | + 0.047 |  | 26 | – |  |
Asn | AAT | AUU | + 0.416 | ** | 0 | Opt-codonwobble | GUU |
Asn | AAC | GUU | −0.244 | ** | 37 | Nonopt-codon↑tRNAs |  |
Asp | GAT | AUC | + 0.520 | ** | 0 | Opt-codonwobble | GUC |
Asp | GAC | GUC | −0.482 | ** | 31 | Nonopt-codon↑tRNAs |  |
Cys | TGT | ACA | + 0.368 | ** | 0 | Opt-codonwobble | GCA |
Cys | TGC | GCA | −0.365 | ** | 38 | Nonopt-codon↑tRNAs |  |
Gln | CAA | UUG | + 0.254 | ** | 39 | Opt-codon↑tRNAs |  |
Gln | CAG | CUG | −0.218 | ** | 37 | Nonopt-codon↑tRNAs |  |
Glu | GAA | UUC | + 0.496 | ** | 31 | Opt-codon↑tRNAs |  |
Glu | GAG | CUC | −0.480 | ** | 18 | Nonopt-codon↑tRNAs |  |
Gly | GGT | ACC | + 0.610 | ** | 0 | Opt-codonwobble | GCC |
Gly | GGC | GCC | −0.709 | ** | 41 | Nonopt-codon↑tRNAs |  |
Gly | GGA | UCC | + 0.483 | ** | 19 | – |  |
Gly | GGG | CCC | −0.383 | ** | 11 | – |  |
His | CAT | AUG | + 0.511 | ** | 0 | Opt-codonwobble | GUG |
His | CAC | GUG | −0.452 | ** | 37 | Nonopt-codon↑tRNAs |  |
Ile | ATT | AAU | + 0.603 | ** | 22 | Opt-codon↑tRNAs |  |
Ile | ATC | GAU | −0.452 | ** | 0 | Nonopt-codon↓tRNAs |  |
Ile | ATA | UAU | + 0.045 |  | 19 | – |  |
Leu | TTA | UAA | + 0.537 | ** | 28 | Opt-codon↑tRNAs |  |
Leu | TTG | CAA | + 0.383 | ** | 16 | – |  |
Leu | CTT | AAG | + 0.409 | ** | 39 | – |  |
Leu | CTC | GAG | −0.629 | ** | 0 | – |  |
Leu | CTA | UAG | + 0.007 |  | 28 | – |  |
Leu | CTG | CAG | −0.692 | ** | 30 | Nonopt-codon↑tRNAs |  |
Lys | AAA | UUU | + 0.263 | ** | 20 | Opt-codon↑tRNAs |  |
Lys | AAG | CUU | −0.160 | ** | 50 | Nonopt-codon↑tRNAs |  |
Phe | TTT | AAA | + 0.407 | ** | 0 | Opt-codonwobble | GAA |
Phe | TTC | GAA | −0.265 | ** | 48 | Nonopt-codon↑tRNAs |  |
Pro | CCT | AGG | + 0.749 | ** | 36 | Opt-codon↑tRNAs |  |
Pro | CCC | GGG | −0.359 | ** | 0 | – |  |
Pro | CCA | UGG | + 0.483 | ** | 31 | – |  |
Pro | CCG | CGG | −0.843 | ** | 36 | Nonopt-codon↑tRNAs |  |
Ser | TCT | AGA | + 0.731 | ** | 36 | Opt-codon↑tRNAs |  |
Ser | TCC | GGA | −0.208 | ** | 0 | – |  |
Ser | TCA | UGA | + 0.493 | ** | 21 | – |  |
Ser | TCG | CGA | −0.723 | ** | 15 | Nonopt-codon↑tRNAs |  |
Ser | AGT | ACU | + 0.325 | ** | 0 | – |  |
Ser | AGC | GCU | −0.619 | ** | 60 | – |  |
Thr | ACT | AGU | + 0.644 | ** | 35 | Opt-codon↑tRNAs |  |
Thr | ACC | GGU | −0.223 | ** | 0 | – |  |
Thr | ACA | UGU | + 0.493 | ** | 37 | – |  |
Thr | ACG | CGU | −0.873 | ** | 31 | Nonopt-codon↑tRNAs |  |
Tyr | TAT | AUA | + 0.430 | ** | 0 | Opt-codonwobble | GUA |
Tyr | TAC | GUA | −0.186 | ** | 43 | Nonopt-codon↑tRNAs |  |
Val | GTT | AAC | + 0.600 | ** | 26 | Opt-codon↑tRNAs |  |
Val | GTC | GAC | −0.394 | ** | 0 | – |  |
Val | GTA | UAC | + 0.314 | ** | 30 | – |  |
Val | GTG | CAC | −0.484 | ** | 40 | Nonopt-codon↑tRNAs |  |
Amino acids with one codon | Â | Â | Â | Â | |||
Met | ATG | CAU |  |  | 43 | – |  |
Trp | TGG | CCA |  |  | 32 | – |  |
Total tRNAs | Â | Â | Â | Â | 1391 | Â | Â |