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Table 2 The putative cis-elements in the promoters of 17 Ibbgal genes

From: Genome-wide in silico identification and expression analysis of beta-galactosidase family members in sweetpotato [Ipomoea batatas (L.) Lam]

Gene

Plant hormone response elements

Stress response elements

Light response elements

Other elements

Ibbgal1

ABRE4, AuxRE2, GARE2, TATC-BOX, PYRIMIDINEBOXHVEPB1

box-W2, MYC-like18, ACGT10

INR8, GT1-motif5, Box 4 8, IBOX5, GBOX3, GATAbox10, GAG-motif, TCT-motif3, Box II

EEs, TATA-box21, GT15, CCAAT-box3, AAGAA-motif

Ibbgal2

GARE4, TGACG-motif2, DPBFCOREDCDC32, CATATGGMSAUR4

MBS2, MYC-like18, ACGT2

INR 3, IBOX2, GATAbox14,GAG-motif, TBOX2, TCT-motif2,AT1-motif

Circadian2, TATA-box18, CCAAT-box9, GCN4-motif, RY-element4, GT12

Ibbgal3

ABRE,ERE, DPBFCOREDCDC33,

MYC-like16, ACGT2

INR2, GT1-motif, IBOX6, DRE2, GATAbox15, GAG-motif, TBOX3, TCT-motif, Box II2

Circadian, TATA-box17, CCAAT-box6, RY-element2, GT12

Ibbgal4

ABRE5, GARE, AuxRE2, PYRIMIDINEBOXHVEPB1

box-W, MYC-like18, ACGT10

INR8, GT1-motif5, Box 48, IBOX5, GATAbox10, GAG-motif, TCT-motif3, Box II

EEs,TATA-box 21,CCAAT-box 3,GT15, AAGAA-motif

Ibbgal5

ABRE3, ERE, GARE, CGTCA-motif2, TGACG-motif4, DPBFCOREDCDC34, PYRIMIDINEBOXHVEPB1

LRT, box-W, MYC-like12, ACGT8, MBS3,GT18

INR6, GT1-motif2, Box 43, IBOX3, GATAbox15, Box A, TBOX,TCT-motif2, Box II2

Circadian3, TATA-box 15, CCAAT-box6, Box A,

Ibbgal6

ABRE2, ERE, GARE2, CGTCA-motif2, TGACG-motif4, DRE2COREZMRAB17, PYRIMIDINEBOXHVEPB1

LRT3, MYC-like10, ACGT12

INR4, GT1-motif, Box 4, IBOX8, GATAbox22, TBOX, TCT-motif5, Box II4

TATA-box21, CCAAT-box4, RY-element, GT13

Ibbgal7

ERE, GARE2, AuxRE, CGTCA-motif, TGACG-motif3, DPBFCOREDCDC32, CATATGGMSAUR2

MYC-like14, ACGT4, GT-15

INR4, Box 42, IBOX14, GATAbox17

Circadian4, TATA-box17, CCAAT-box9, RY-element2

Ibbgal8

ABRE3, ERE, GARE, DPBFCOREDCDC34, CATATGGMSAUR4

LRT2, MYC-like20, DRE2, ACGT12, MBS2,GT-19

INR3, GT1-motif, Box 44, IBOX8, GATAbox18, TCT-motif3, Box II3

Circadian2, TATA-box20, CCAAT-box3, RY-element

Ibbgal9

ABRE, ERE, GARE2

LRT3, MYC-like8, ACGT6, GT-15

INR3, GT1-motif, Box 42, IBOX13,GATAbox22, Tbox2, Box II3

Circadian5, EEs, TATA-box28, CCAAT-box3,GCN4-motif, RY-element4

Ibbgal10

ABRE2,GARE,DPBFCOREDCDC3, CATATGGMSAUR2,PYRIMIDINEBOXHVEPB1

box-W, MYC-like18, ACGT12, MBS3, GT-12

INR2, Box 43, IBOX7

TATA-box16, CCAAT-box3, RY-element3, Box A2

Ibbgal11

GARE3,CATATGGMSAUR2, PYRIMIDINEBOXHVEPB1

MYC-like8, ACGT4, MBS2, GT-12

INR5, GT1-motif, Box 43, IBOX7, GATAbox18, GAG-motif, TBOX2, TCT-motif, Box II

Circadian,TATA-box23, CCAAT-box4,AAGAA-motif, RY-element2

Ibbgal12

ABRE3, ERE, GARE4, TGACG-motif, PYRIMIDINEBOXHVEPB1

LRT3, box-W, MYC-like18, DRE4, ACGT8,GT-18

INR8, GT1-motif, Box 43, IBOX3, GATAbox21, TCT-motif, Box II2

Circadian2, TATA-box27, CCAAT-box3,RY-element

Ibbgal13

ABRE3, ERE, TGACG-motif, DPBFCOREDCDC3

LRT2, MYC-like18, ACGT6, MBS2, GT-14

INR4, GT1-motif3, IBOX15, GATAbox15, GAG-motif, TBOX, Box II3

Circadian, TATA-box12, CCAAT-box4, RY-element

Ibbgal14

ABRE3, ERE, GARE, TGACG-motif, DPBFCOREDCDC32, CATATGGMSAUR4

LRT4, box-W, MYC-like14, ACGT6, MBS,GT-13

INR3, GT1-motif2, Box 4, IBOX10, GATAbox18,CATT, TBOX3, Box II3

Circadian, TATA-box13, CCAAT-box6, RY-element3

Ibbgal15

GARE2, DPBFCOREDCDC32

LRT3, box-W2, MYC-like28, GT-12

INR4, GT1-motif2, IBOX3, GATAbox10, TBOX2, TCT-motif, Box II

Circadian, TATA-box2, CCAAT-box5, RY-element

Ibbgal16

ERE, GARE2, DPBFCOREDCDC33, CATATGGMSAUR2

LRT2, box-W, MYC-like8, DRE3, GT-16

INR4, Box 45, IBOX2, GATAbox13, GAG-motif, TBOX, TCT-motif

TATA-box36, CCAAT-box3, RY-element

Ibbgal17

ABRE7, ERE, GARE3, TGACG-motif4, DPBFCOREDCDC36, CATATGGMSAUR2, GCCCORE

LRT2, box-W3, MYC-like10, ACGT6, MBS2, GT-1

INR2, GT1-motif, Box 4, IBOX9, GATAbox24, TBOX, Box II

TATA-box18, CCAAT-box4, GCN4-motif, RY-element4

  1. Superscript numbers represent the repeats (2 or more than 2) of each cis-element in the Ibbgal promoter, while the others only contain one copy of corresponding cis-element
  2. ABRE and ACGT cis-acting elements involved in the abscisic acid responsiveness, AuxRE cis-acting regulatory element involved in auxin responsiveness, AAGAA-motif cis-element involved in secondary xylem development, Box A cis-acting elements of phenylalanine ammonia-lyase, Box II part of a light responsive element, Box-W fungal elicitor responsive element, Box 4 part of a conserved DNA module involved in light responsiveness; CATATGGMSAUR, cis-acting element involved in auxin responsiveness, CCAAT-box MYBHv1 binding site, Circadian cis-acting regulatory element involved in circadian control, DPBFCOREDCDC3 induced by ABA; DRE, cis-acting element involved in drought response, EEs part of evening and circadian response, ERE ethylene-responsive element, GARE gibberellin-responsive element, GATA-motif part of a light responsive element, Gbox cis-acting regulatory element involved in light responsiveness, GATAbox part of a light responsive element, GAG-motif part of a light responsive element, GCCCORE, cis-acting element involved in jasmonate responsiveness, GCN4-motif cis-regulatory element involved in endosperm, GT1-motif light responsive element, GT-1 cis-acting element involved in the salt stress, INR part of a light responsive element, IBOX part of a light responsive element, LTR cis-acting element involved in low-temperature responsiveness, MBS MYB binding site involved in drought-inducibility, MYC-like, cis-acting elements of drought-responsive, PYRIMIDINEBOXHVEPB1 cis- and trans-acting elements involved in gibberellins and abscisic acid responsiveness, RY-element cis-acting regulatory element involved in seedspecific regulation, TATA-box core promoter element around −30 of transcription start, TATC-box cis-acting element involved in gibberellin-responsiveness, TBOX part of a light responsive element, TCT-motif part of a light responsive element, TGACG-motif cis-acting regulatory element involved in the MeJA-responsiveness
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BMC Genomics

ISSN: 1471-2164

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