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Table 4 List of significant SNPs associated with more than one trait under normal conditions

From: Genome wide association mapping for heat tolerance in sub-tropical maize

SNP Chr Position (bp) Trait P-value MAF PV (%) Gene model
S6_156,527,428 6 156,527,428 AD +SD 10−5 0.21 38.82–45.78  
S6_156,527,431 6 156,527,431 AD + SD 10−5 0.21 38.82–45.78  
S6_156,527,432 6 156,527,432 AD + SD 10−5 0.21 38.82–45.78  
S1_4,752,039 1 4,752,039 AD +SD 10−5 0.16 38.74–45.71  
S6_156,527,380 6 156,527,380 AD + SD 10−5 0.19 38.71–45.63  
S1_228,565,627 1 228,565,627 AD + SD 10−5 0.27 38.76–45.45 GRMZM5G877815
S10_7,132,845 10 7,132,845 AD + SD + GY 10−5 – 10−7 0.10 22.91–45.51 GRMZM2G031624
S10_8,852,411 10 8,852,411 ASI + SD 10−5 – 10−6 0.22 21.77–38.78 GRMZM2G438176
S10_9,473,175 10 9,473,175 ASI + SD 10−5 – 10−6 0.23 21.76–38.72 GRMZM2G048850
S10_1,888,234 10 1,888,234 EH + GY 10−5 – 10−6 0.45 22.22–23.75 AC198366.3_FGT004
S10_1,905,273 10 1,905,273 EH + GY + PH 10−5 – 10−7 0.46 22.36–27.04 GRMZM2G104620
S10_1,905,274 10 1,905,274 EH + GY + PH 10−5 – 10−7 0.46 22.36–27.04 GRMZM2G104620
S10_10,826,645 10 10,826,645 GY + SD 10−6 0.11 22.79–39.21 GRMZM2G418432
S10_1,148,841 10 1,148,841 GY + PH 10−5 – 10−6 0.35 22.68–25.87 GRMZM2G057557
S10_1,883,817 10 1,883,817 GY + PH 10−5 – 10−6 0.49 21.91–26.43 GRMZM2G317287
  1. Chr Chromosome, Position (bp) Position of SNP in base pairs, P-value = Significance threshold level, MAF Minor allele frequency, PV (%) Percentage of the phenotypic variation range explained by SNP markers, GY Grain yield, AD Days to 50% anthesis, SD Days to 50% silking, ASI Anthesis-silking interval, PH Plant height, EH Ear height and EPO Ear position