Table 6 List of significant haplotypes associated more than one trait under normal and heat stress conditions
From: Genome wide association mapping for heat tolerance in sub-tropical maize
Condition | Haplotype blocks | Chr. | Trait | Marker used | Alleles/Haplotypes | R squared | Bonferroni P | Gene model |
|---|---|---|---|---|---|---|---|---|
Normal | Hap_4 | 4 | GY | S4_4748055, S4_4748074 | 2 | 0.065935 | 1.73E-08 | GRMZM2G583593 |
| Â | Hap_4.1 | Â | ASI | S4_4748055, S4_4748074 | 2 | 0.053516 | 9.75E-07 | Â |
| Â | Hap_4 | Â | SD | S4_4748055, S4_4748074 | 2 | 0.019148 | 0.029166 | Â |
| Â | Hap_10.2 | 10 | GY | S10_1,148,841, S10_1280099 | 2 | 0.089652 | 8.79E-09 | GRMZM2G057557 |
| Â | Hap_10.1 | Â | PH | S10_1,148,841, S10_1280099 | 2 | 0.093807 | 1.53E-09 | Â |
| Â | Hap_10.3 | 10 | GY | S10_1902587, S10_1902592, S10_1902657 | 2 | 0.134391 | 5.94E-17 | Â |
| Â | Hap_10.1 | Â | EH | S10_1902587, S10_1902592, S10_1902657 | 2 | 0.086085 | 1.07E-10 | Â |
| Â | Hap_10.4 | 10 | GY | S10_1905237, S10_1905245, S10_1,905,273, S10_1,905,274 | 3 | 0.071581 | 3.63E-09 | GRMZM2G104620 |
| Â | Hap_10.3 | Â | PH | S10_1905237, S10_1905245, S10_1,905,273, S10_1,905,274 | 3 | 0.103564 | 6.45E-14 | Â |
| Â | Hap_10.2 | Â | EH | S10_1905237, S10_1,905,273, S10_1,905,274 | 3 | 0.06899 | 5.25E-09 | Â |
| Â | Hap_1.1 | 1 | AD | S1_225496598, S1_225575695 | 3 | 0.144835 | 1.58E-20 | GRMZM2G056594 |
| Â | Hap_1.3 | Â | SD | S1_225496598, S1_225575695 | 3 | 0.086711 | 8.38E-12 | Â |
| Â | Hap_5.2 | 5 | AD | S5_213280266, S5_213280287 | 2 | 0.017354 | 0.01968 | GRMZM2G018484 |
| Â | Hap_5.3 | Â | SD | S5_213280266, S5_213280287 | 2 | 0.023856 | 0.00298 | Â |
| Â | Hap_6 | 6 | AD | S6_156,527,380, S6_156527416, S6_156,527,428, S6_156,527,431, S6_156,527,432, S6_156527456 | 2 | 0.038081 | 6.56E-05 | Â |
| Â | Hap_6.3 | Â | SD | S6_156,527,380, S6_156527416, S6_156,527,428, S6_156,527,431, S6_156,527,432, S6_156527456 | 2 | 0.035333 | 0.000222 | Â |
| Â | Hap_8.3 | 8 | AD | S8_146060437, S8_146060465, S8_146060468, S8_146060469, S8_146060472, S8_146060474, S8_146060484, S8_146060492 | 3 | 0.156355 | 8.25E-23 | GRMZM2G109144 |
| Â | Hap_8.2 | Â | SD | S8_146060437, S8_146060465, S8_146060468, S8_146060469, S8_146060472, S8_146060474, S8_146060484, S8_146060492 | 3 | 0.085053 | 7.68E-12 | Â |
| Â | Hap_8 | 8 | EPO | S8_170952700, S8_170952712 | 3 | 0.027939 | 0.000604 | GRMZM2G379128 |
| Â | Hap_8.7 | Â | EH | S8_170952700, S8_170952712 | 3 | 0.135859 | 3.60E-20 | Â |
Heat stress | Hap_3.1 | 3 | EH | S3_135466614, S3_135501902, S3_135505933, S3_135695557, S3_135695608 | 2 | 0.051163 | 4.21E-06 | Â |
| Â | Hap_3.2 | Â | EPO | S3_135466614, S3_135501902, S3_135695557 | 3 | 0.04404 | 2.05E-05 | Â |
| Â | Hap_8.14 | 8 | EH | S8_92967095, S8_92967143, S8_92967144, S8_92967146, S8_92967148, S8_92967149, S8_92967304 | 2 | 0.039025 | 0.000159 | Â |
| Â | Hap_8.2 | Â | EPO | S8_92967095, S8_92967143, S8_92967144, S8_92967146, S8_92967148, S8_92967149 | 2 | 0.027798 | 0.002761 | Â |
| Â | Hap_8.16 | 8 | EH | S8_102137856, S8_102137869 | 2 | 0.081829 | 3.94E-11 | GRMZM2G887068 |
| Â | Hap_8.3 | Â | EPO | S8_102137856, S8_102137869 | 2 | 0.082216 | 2.89E-11 | Â |