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Table 6 List of significant haplotypes associated more than one trait under normal and heat stress conditions

From: Genome wide association mapping for heat tolerance in sub-tropical maize

Condition Haplotype blocks Chr. Trait Marker used Alleles/Haplotypes R squared Bonferroni P Gene model
Normal Hap_4 4 GY S4_4748055, S4_4748074 2 0.065935 1.73E-08 GRMZM2G583593
  Hap_4.1   ASI S4_4748055, S4_4748074 2 0.053516 9.75E-07  
  Hap_4   SD S4_4748055, S4_4748074 2 0.019148 0.029166  
  Hap_10.2 10 GY S10_1,148,841, S10_1280099 2 0.089652 8.79E-09 GRMZM2G057557
  Hap_10.1   PH S10_1,148,841, S10_1280099 2 0.093807 1.53E-09  
  Hap_10.3 10 GY S10_1902587, S10_1902592, S10_1902657 2 0.134391 5.94E-17  
  Hap_10.1   EH S10_1902587, S10_1902592, S10_1902657 2 0.086085 1.07E-10  
  Hap_10.4 10 GY S10_1905237, S10_1905245, S10_1,905,273, S10_1,905,274 3 0.071581 3.63E-09 GRMZM2G104620
  Hap_10.3   PH S10_1905237, S10_1905245, S10_1,905,273, S10_1,905,274 3 0.103564 6.45E-14  
  Hap_10.2   EH S10_1905237, S10_1,905,273, S10_1,905,274 3 0.06899 5.25E-09  
  Hap_1.1 1 AD S1_225496598, S1_225575695 3 0.144835 1.58E-20 GRMZM2G056594
  Hap_1.3   SD S1_225496598, S1_225575695 3 0.086711 8.38E-12  
  Hap_5.2 5 AD S5_213280266, S5_213280287 2 0.017354 0.01968 GRMZM2G018484
  Hap_5.3   SD S5_213280266, S5_213280287 2 0.023856 0.00298  
  Hap_6 6 AD S6_156,527,380, S6_156527416, S6_156,527,428, S6_156,527,431, S6_156,527,432, S6_156527456 2 0.038081 6.56E-05  
  Hap_6.3   SD S6_156,527,380, S6_156527416, S6_156,527,428, S6_156,527,431, S6_156,527,432, S6_156527456 2 0.035333 0.000222  
  Hap_8.3 8 AD S8_146060437, S8_146060465, S8_146060468, S8_146060469, S8_146060472, S8_146060474, S8_146060484, S8_146060492 3 0.156355 8.25E-23 GRMZM2G109144
  Hap_8.2   SD S8_146060437, S8_146060465, S8_146060468, S8_146060469, S8_146060472, S8_146060474, S8_146060484, S8_146060492 3 0.085053 7.68E-12  
  Hap_8 8 EPO S8_170952700, S8_170952712 3 0.027939 0.000604 GRMZM2G379128
  Hap_8.7   EH S8_170952700, S8_170952712 3 0.135859 3.60E-20  
Heat stress Hap_3.1 3 EH S3_135466614, S3_135501902, S3_135505933, S3_135695557, S3_135695608 2 0.051163 4.21E-06  
  Hap_3.2   EPO S3_135466614, S3_135501902, S3_135695557 3 0.04404 2.05E-05  
  Hap_8.14 8 EH S8_92967095, S8_92967143, S8_92967144, S8_92967146, S8_92967148, S8_92967149, S8_92967304 2 0.039025 0.000159  
  Hap_8.2   EPO S8_92967095, S8_92967143, S8_92967144, S8_92967146, S8_92967148, S8_92967149 2 0.027798 0.002761  
  Hap_8.16 8 EH S8_102137856, S8_102137869 2 0.081829 3.94E-11 GRMZM2G887068
  Hap_8.3   EPO S8_102137856, S8_102137869 2 0.082216 2.89E-11  
  1. Chr Chromosome, GY Grain yield, AD Days to 50% anthesis, SD Days to 50% silking, ASI anthesis-silking interval, PH Plant height, EH Ear height and EPO Ear position