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Fig. 3 | BMC Genomics

Fig. 3

From: WASP: a versatile, web-accessible single cell RNA-Seq processing platform

Fig. 3

Examples of WASP pre-processing quality metrics. a A summary page shows quality metrics about identified barcodes, STAR mapping and featureCounts analyses. b Results for each analysis step, e.g. the STAR mapping, are presented in a detailed page as well with interactive selection of metrics (e.g. categories of mapped and unmapped reads) c On the last page, users select the number of barcodes to be used for further analysis. By calculating a knee plot, WASP provides users with a suggested number of detected true-positive barcodes

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