Table 1 The GO and KEGG enrichment for up- and down- regulated DEGs at the early stage (3 h) with FC ≥ 1.5
ID | Description | p-value | q-value |
|---|---|---|---|
Up-regulated | |||
 KEGG Enrichment | |||
  ko03008 | Ribosome biogenesis in eukaryotes | 1.46E-11 | 1.36E-09 |
  ko04626 | Plant-pathogen interaction | 1.07E-08 | 9.91E-07 |
  ko00071 | Fatty acid degradation | 8.46E-07 | 7.87E-05 |
  ko00592 | alpha-Linolenic acid metabolism | 9.29E-07 | 8.64E-05 |
  ko04712 | Circadian rhythm - plant | 1.53E-05 | 1.42E-03 |
 GO Enrichment | |||
  GO:0032549 | ribonucleoside binding | 1.23E-06 | 5.48E-04 |
  GO:0003899 | DNA-directed 5′-3′ RNA polymerase activity | 3.15E-06 | 1.40E-03 |
  GO:0009982 | pseudouridine synthase activity | 1.44E-05 | 6.41E-03 |
  GO:0004004 | ATP-dependent RNA helicase activity | 1.79E-05 | 7.98E-03 |
  GO:0005739 | mitochondrion | 3.59E-06 | 5.27E-04 |
  GO:0009570 | chloroplast stroma | 1.43E-05 | 2.10E-03 |
  GO:0032040 | small-subunit processome | 1.44E-05 | 2.12E-03 |
  GO:0006351 | transcription, DNA-templated | 6.58E-09 | 3.83E-06 |
  GO:0000373 | Group II intron splicing | 2.49E-07 | 1.45E-04 |
  GO:0050789 | regulation of biological process | 7.51E-07 | 4.37E-04 |
  GO:0010478 | chlororespiration | 5.22E-06 | 3.04E-03 |
  GO:0010501 | RNA secondary structure unwinding | 8.14E-06 | 4.74E-03 |
Down-regulated | |||
 KEGG Enrichment | |||
  ko04141 | Protein processing in endoplasmic reticulum | 2.44E-05 | 1.54E-03 |
 GO Enrichment | |||
  GO:0004512 | inositol-3-phosphate synthase activity | 1.22E-08 | 1.95E-06 |
  GO:0000155 | phosphorelay sensor kinase activity | 9.80E-06 | 1.57E-03 |
  GO:0006021 | inositol biosynthetic process | 1.47E-08 | 3.37E-06 |
  GO:0019419 | sulfate reduction | 7.26E-08 | 1.67E-05 |
  GO:0009638 | phototropism | 2.92E-06 | 6.72E-04 |