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Fig. 6 | BMC Genomics

Fig. 6

From: Chromosome-length genome assembly and structural variations of the primal Basenji dog (Canis lupus familiaris) genome

Fig. 6

Comparative short read mapping and single nucleotide variant calling for 58 dog breeds versus three reference genomes: CanFam_Bas (Bas), CanFam3.1 (3.1) and CanFam_GSD (GSD). a. Relative percentage of reads mapped to each reference calculated by subtracting the mean percentage of reads for the three reference genomes from the number of reads for each reference. b. Relative percentage of reads mapped to each reference for three closely related clades determined from Parker et al. [10]. The Basenji is closely related to the Asian Spitz clade. The Boxer is a member of the European Mastiff clade and the GSD is a member of the New world clade. c. The number of SNVs. d. The number of small indels

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BMC Genomics

ISSN: 1471-2164

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