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Table 1 Novel SINE elements identified in this study

From: Diversity of short interspersed nuclear elements (SINEs) in lepidopteran insects and evidence of horizontal SINE transfer between baculovirus and lepidopteran hosts

SINE Family Species RNA Origin Consensus Length Tail Copy Numbera Divergence Resource
PxSE1 Plutella xylostella/Yponomeutoidea tRNA 263 (GT)n 6208 (68) 0.035 WGS
MsSE1 Manduca sexta/Bombycoidea tRNA 267 (GT)n 7513 (133) 0.091 WGS
SfSE1 Spodoptera frugiperda/Noctuoidea tRNA 298 (ATGT)n 11,117 (79) 0.130 WGS
SlNPVSE1 Spodoptera litura nucleopolyhedrovirus II tRNA 260 (TGTTA)n 1 (1) ND Nr/nt
SlituSE1 Spodoptera litura/Noctuoidea tRNA 259 (ATGTT)n ND(8) ND EST
SlittSE1 Spodoptera littoralis/Noctuoidea tRNA 270 (ATGTT)n ND(15) ND EST
CfSE1 Choristoneura fumiferana/Tortricoidea tRNA 252 (ATTT)n ND(10) ND EST
PxSE2 P. xylostella tRNA 263 (ATTT)n 5056 (33) 0.071 WGS
ObSE1 Operophtera brumata/Geometroidea tRNA 275 (TATT)n 4521 (120) 0.066 WGS
CsSE1 Chilo suppressalis/Pyraloidea tRNA 287 (TATT)n 533 (125) 0.036 WGS
PxSE3 P. xylostella tRNA 339 (GAATA)n 5158 (50) 0.089 WGS
MsSE2 M. sexta tRNA 333 (TAT)n 16,157 (126) 0.090 WGS
PgSE1 Papilio glaucus/Papilionoidea tRNA 303 (TAT)n 1751 (66) 0.097 WGS
PmSE1 Papilio machaon/Papilionoidea tRNA 310 (GAT)n 5740 (138) 0.098 WGS
LaSE1 Lerema accius/Hesperioidea tRNA 319 (GAT)n 3832 (52) 0.107 WGS
PzSE1 Papilio zelicaon/Papilionoidea tRNA 293 (GAT)n ND(15) ND TSA
EpSE1 Erynnis propertius/Hesperioidea tRNA 300 ND ND(8) ND TSA
SeSE1 Spodoptera exigua/Noctuidae tRNA 291 (GAT)n ND(43) ND TSA
PxSE4 P. xylostella 5S rRNA 389 (TGA)n 4415 (50) 0.078 WGS
LaSE2 L. accius 5S rRNA 348 ND 1214 (45) 0.101 WGS
CsSE2 C. suppressalis 5S rRNA 294 (TGA)n 532 (169) 0.021 WGS
ObSE2 O. brumata tRNA 255 (CGAAA)n 863 (65) 0.012 WGS
PxSE5 P. xylostella 5S rRNA 389 (ATGT)n 1952 (23) 0.132 WGS
  1. ND not determined
  2. a the number in bracket is the number of copies used to reconstruct the consensus sequences