A high-density genetic map construction and sex-related loci identification in Chinese Giant salamander

BMC Genomics

Table 1 The characterization of genetic linkage groups in Chinese giant salamander

LG ID	Paternal map			Maternal map			Integrated map
LG ID	No. of SNPs	Distance (cM)	Average inter-loci distance (cM)	No. of SNPs	Distance (cM)	Average inter-loci distance (cM)	No. of SNPs	Distance (cM)	Average inter-loci distance (cM)
1	674	244.33	0.36	476	298.26	0.63	893	232.59	0.26
2	598	190.49	0.32	468	250.72	0.54	990	280.81	0.28
3	571	126.48	0.22	399	91.29	0.23	878	94.61	0.11
4	479	207.83	0.43	461	142.50	0.31	819	169.94	0.21
5	482	95.61	0.20	324	206.01	0.64	715	152.80	0.21
6	490	107.73	0.22	294	146.24	0.50	684	116.99	0.17
7	559	136.63	0.24	197	257.03	1.30	681	214.38	0.31
8	405	108.35	0.27	196	213.29	1.09	541	159.12	0.29
9	379	91.67	0.24	225	113.66	0.51	522	106.37	0.20
10	333	85.95	0.26	231	135.56	0.59	484	134.56	0.28
11	341	74.49	0.22	195	115.06	0.59	458	98.52	0.22
12	218	50.91	0.23	133	56.84	0.43	314	61.57	0.20
13	161	46.02	0.29	98	47.73	0.49	240	52.01	0.22
14	87	66.21	0.76	169	17.44	0.10	228	66.64	0.29
15	215	26.67	0.12	42	54.99	1.31	225	62.60	0.28
16	134	36.53	0.27	89	41.67	0.47	202	47.38	0.23
17	192	0.00	0.00	8	25.45	3.18	192	56.57	0.29
18	20	34.47	1.72	183	28.12	0.15	183	55.65	0.30
19	178	32.53	0.18	27	62.40	2.31	180	74.74	0.42
20	59	43.77	0.74	138	38.81	0.28	173	55.06	0.32
21	156	0.00	0.00	2	14.25	7.13	156	22.19	0.14
22	152	1.01	0.01	10	15.17	1.52	152	40.87	0.27
23	148	24.67	0.17	42	28.41	0.68	148	30.32	0.20
24	58	14.21	0.25	89	45.28	0.51	136	35.40	0.26
25	87	36.90	0.42	73	45.41	0.62	134	56.00	0.42
26	28	70.95	2.53	129	36.38	0.28	129	62.41	0.48
27	117	0.00	0.00	0	0.00	NA	117	20.68	0.18
28	111	19.69	0.18	23	36.57	1.59	111	32.36	0.29
29	16	37.70	2.36	106	12.47	0.12	106	32.35	0.31
30	105	0.00	0.00	3	3.03	1.01	105	17.61	0.17
Total	7553	2011.80	0.27	4830	2580.04	0.53	10,896	2643.10	0.24

ISSN: 1471-2164