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Table 6 INDELs in high or moderate effect categories

From: Investigating the impact of reference assembly choice on genomic analyses in a cattle breed

 

ARS-UCD1.2

UOA_Angus_1

Frameshift variant

6,289

7,435

Inframe deletion*

1,761

1,972

Inframe insertion*

850

985

Splice donor variant

291

298

Splice acceptor variant

292

292

Stop gained

218

288

Protein altering variant*

87

107

Start lost

20

14

Stop lost

11

15

Transcript ablation

5

6

  1. Number of INDELs in high and moderate (marked with an asterisk) effect categories per assembly
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BMC Genomics

ISSN: 1471-2164

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