Skip to main content

Table 3 Significant heading date QTL information from best environment. For each QTL, information from the experiment where that QTL had the largest estimated effect (Best Env) is given. The average difference in phenotype between two RILs homozygous for alternative alleles at each QTL is given as twice the estimated allele effect of the LA95135 allele (2α), along with proportion of additive variation associated with each QTL (pA). Vrn-A3 only has a significant effect within the half of the population homozygous Ppd-D1b

From: Characterizing the oligogenic architecture of plant growth phenotypes informs genomic selection approaches in a common wheat population

QTL Name

Candidate Gene

Best Env

Peak Marker

Position CI

LOD

2α (days)

pA

Qncb.HD-2D

Ppd-D1

Ral 19

Ppd-D1

59-64 Mb

48.6

3.4

0.67

Qncb.HD-3A

FT2

Pla 19

S3A_434822203

121-571 Mb

13.0

-2.6

0.12

Qncb.HD-4D

Rht-D1

Kin 19

Rht-D1

0-352 Mb

4.85

0.9

0.06

Qncb.HD-5A

NA

Pla 19

S5A_169302619

51.6-435 Mb

14.1

-2.7

0.15

Qncb.HD-5B

NA

Kin 19

S5B_511010094

436-476 Mb

7.7

-1.3

0.08

Qncb.HD-7A

Vrn-A3

Ral 18 (Ppd-D1b)

S7A_72104395

57.7-85.9 Mb

4.23

NA

NA